Strain Fitness in Pseudomonas simiae WCS417 around PS417_04250

Experiment: L-Lysine 60 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_04240 and PS417_04245 are separated by 16 nucleotidesPS417_04245 and PS417_04250 are separated by 210 nucleotidesPS417_04250 and PS417_04255 are separated by 170 nucleotides PS417_04240: PS417_04240 - glutamyl-tRNA amidotransferase, at 949,874 to 951,325 _04240 PS417_04245: PS417_04245 - glutamyl-tRNA amidotransferase, at 951,342 to 951,629 _04245 PS417_04250: PS417_04250 - rod shape-determining protein MreB, at 951,840 to 952,877 _04250 PS417_04255: PS417_04255 - rod shape-determining protein MreC, at 953,048 to 954,118 _04255 Position (kb) 951 952 953Strain fitness (log2 ratio) -1 0 1at 952.942 kb on + strandat 953.839 kb on + strand, within PS417_04255

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 60 mM
remove
952,942 + +0.1
953,839 + PS417_04255 0.74 -0.5

Or see this region's nucleotide sequence