Experiment: L-Lysine 60 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03610 and PS417_03615 overlap by 7 nucleotides PS417_03615 and PS417_03620 overlap by 8 nucleotides PS417_03620 and PS417_03625 are separated by 112 nucleotides PS417_03625 and PS417_03630 are separated by 136 nucleotides
PS417_03610: PS417_03610 - SAM-dependent methyltransferase, at 821,108 to 821,938
_03610
PS417_03615: PS417_03615 - molybdopterin-synthase adenylyltransferase, at 821,932 to 822,687
_03615
PS417_03620: PS417_03620 - glutamate racemase, at 822,680 to 823,474
_03620
PS417_03625: PS417_03625 - lipid A 3-O-deacylase, at 823,587 to 824,105
_03625
PS417_03630: PS417_03630 - hypothetical protein, at 824,242 to 824,463
_03630
Position (kb) 822
823
824 Strain fitness (log2 ratio) -1
0
1
2 at 822.456 kb on - strand, within PS417_03615 at 823.435 kb on - strand at 823.531 kb on + strand at 823.531 kb on + strand at 823.532 kb on - strand at 823.532 kb on - strand at 823.541 kb on + strand at 823.549 kb on - strand at 823.549 kb on - strand at 823.560 kb on + strand at 823.560 kb on + strand at 823.560 kb on + strand at 823.560 kb on + strand at 823.734 kb on - strand, within PS417_03625 at 823.795 kb on - strand, within PS417_03625 at 823.795 kb on - strand, within PS417_03625 at 823.884 kb on + strand, within PS417_03625 at 823.884 kb on + strand, within PS417_03625 at 823.884 kb on + strand, within PS417_03625 at 823.885 kb on - strand, within PS417_03625 at 823.885 kb on - strand, within PS417_03625 at 823.885 kb on - strand, within PS417_03625 at 823.886 kb on + strand, within PS417_03625 at 823.886 kb on + strand, within PS417_03625 at 823.886 kb on + strand, within PS417_03625 at 824.076 kb on + strand at 824.076 kb on + strand at 824.077 kb on - strand at 824.088 kb on + strand at 824.089 kb on - strand at 824.089 kb on - strand at 824.104 kb on - strand at 824.170 kb on + strand at 824.185 kb on + strand at 824.186 kb on - strand at 824.221 kb on - strand at 824.340 kb on + strand, within PS417_03630 at 824.340 kb on + strand, within PS417_03630 at 824.341 kb on - strand, within PS417_03630 at 824.341 kb on - strand, within PS417_03630 at 824.428 kb on - strand, within PS417_03630 at 824.429 kb on + strand, within PS417_03630
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 60 mM remove 822,456 - PS417_03615 0.69 +0.1 823,435 - -0.2 823,531 + +0.5 823,531 + +0.3 823,532 - +0.3 823,532 - +0.6 823,541 + +0.4 823,549 - -1.1 823,549 - +0.1 823,560 + +0.7 823,560 + +2.1 823,560 + +0.1 823,560 + +0.2 823,734 - PS417_03625 0.28 -0.4 823,795 - PS417_03625 0.40 +0.3 823,795 - PS417_03625 0.40 -0.1 823,884 + PS417_03625 0.57 -0.1 823,884 + PS417_03625 0.57 -0.9 823,884 + PS417_03625 0.57 -0.8 823,885 - PS417_03625 0.57 -0.2 823,885 - PS417_03625 0.57 +0.3 823,885 - PS417_03625 0.57 -0.5 823,886 + PS417_03625 0.58 -0.4 823,886 + PS417_03625 0.58 -1.2 823,886 + PS417_03625 0.58 -1.0 824,076 + -0.1 824,076 + +0.9 824,077 - +0.1 824,088 + -1.6 824,089 - -0.2 824,089 - +0.0 824,104 - +1.1 824,170 + -0.2 824,185 + -0.2 824,186 - -1.2 824,221 - +0.5 824,340 + PS417_03630 0.44 +0.1 824,340 + PS417_03630 0.44 +0.1 824,341 - PS417_03630 0.45 -0.9 824,341 - PS417_03630 0.45 +0.9 824,428 - PS417_03630 0.84 +0.3 824,429 + PS417_03630 0.84 -1.1
Or see this region's nucleotide sequence