Strain Fitness in Pseudomonas simiae WCS417 around PS417_28455

Experiment: L-Lysine 60 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28450 and PS417_28455 are separated by 228 nucleotidesPS417_28455 and PS417_28460 are separated by 123 nucleotidesPS417_28460 and PS417_28465 are separated by 44 nucleotides PS417_28450: PS417_28450 - XRE family transcriptional regulator, at 6,146,183 to 6,146,950 _28450 PS417_28455: PS417_28455 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 6,147,179 to 6,148,546 _28455 PS417_28460: PS417_28460 - ATP synthase F0F1 subunit epsilon, at 6,148,670 to 6,149,086 _28460 PS417_28465: PS417_28465 - ATP synthase F0F1 subunit beta, at 6,149,131 to 6,150,507 _28465 Position (kb) 6147 6148 6149Strain fitness (log2 ratio) -2 -1 0 1at 6146.185 kb on - strandat 6146.461 kb on - strand, within PS417_28450at 6146.538 kb on - strand, within PS417_28450at 6146.722 kb on - strand, within PS417_28450at 6146.722 kb on - strand, within PS417_28450at 6147.036 kb on + strandat 6147.150 kb on + strandat 6147.150 kb on + strandat 6147.150 kb on + strandat 6147.154 kb on + strandat 6147.154 kb on + strandat 6147.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 60 mM
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6,146,185 - -0.9
6,146,461 - PS417_28450 0.36 -0.4
6,146,538 - PS417_28450 0.46 +0.4
6,146,722 - PS417_28450 0.70 +0.5
6,146,722 - PS417_28450 0.70 -0.8
6,147,036 + -0.1
6,147,150 + -0.3
6,147,150 + +0.7
6,147,150 + -2.7
6,147,154 + -1.7
6,147,154 + -0.3
6,147,155 - +0.2

Or see this region's nucleotide sequence