Experiment: L-Lysine 60 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28450 and PS417_28455 are separated by 228 nucleotides PS417_28455 and PS417_28460 are separated by 123 nucleotides PS417_28460 and PS417_28465 are separated by 44 nucleotides
PS417_28450: PS417_28450 - XRE family transcriptional regulator, at 6,146,183 to 6,146,950
_28450
PS417_28455: PS417_28455 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 6,147,179 to 6,148,546
_28455
PS417_28460: PS417_28460 - ATP synthase F0F1 subunit epsilon, at 6,148,670 to 6,149,086
_28460
PS417_28465: PS417_28465 - ATP synthase F0F1 subunit beta, at 6,149,131 to 6,150,507
_28465
Position (kb)
6147
6148
6149 Strain fitness (log2 ratio)
-2
-1
0
1 at 6146.185 kb on - strand at 6146.461 kb on - strand, within PS417_28450 at 6146.538 kb on - strand, within PS417_28450 at 6146.722 kb on - strand, within PS417_28450 at 6146.722 kb on - strand, within PS417_28450 at 6147.036 kb on + strand at 6147.150 kb on + strand at 6147.150 kb on + strand at 6147.150 kb on + strand at 6147.154 kb on + strand at 6147.154 kb on + strand at 6147.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 60 mM remove 6,146,185 - -0.9 6,146,461 - PS417_28450 0.36 -0.4 6,146,538 - PS417_28450 0.46 +0.4 6,146,722 - PS417_28450 0.70 +0.5 6,146,722 - PS417_28450 0.70 -0.8 6,147,036 + -0.1 6,147,150 + -0.3 6,147,150 + +0.7 6,147,150 + -2.7 6,147,154 + -1.7 6,147,154 + -0.3 6,147,155 - +0.2
Or see this region's nucleotide sequence