Experiment: L-Lysine 60 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26405 and PS417_26410 are separated by 310 nucleotides PS417_26410 and PS417_26415 are separated by 54 nucleotides
PS417_26405: PS417_26405 - diguanylate cyclase, at 5,709,821 to 5,711,926
_26405
PS417_26410: PS417_26410 - alginate lyase, at 5,712,237 to 5,712,902
_26410
PS417_26415: PS417_26415 - fructose-1,6-bisphosphate aldolase, at 5,712,957 to 5,714,021
_26415
Position (kb) 5712
5713 Strain fitness (log2 ratio) -2
-1
0
1 at 5711.237 kb on + strand, within PS417_26405 at 5711.238 kb on - strand, within PS417_26405 at 5711.312 kb on + strand, within PS417_26405 at 5711.312 kb on + strand, within PS417_26405 at 5711.312 kb on + strand, within PS417_26405 at 5711.489 kb on + strand, within PS417_26405 at 5711.489 kb on + strand, within PS417_26405 at 5711.489 kb on + strand, within PS417_26405 at 5711.490 kb on - strand, within PS417_26405 at 5711.653 kb on + strand, within PS417_26405 at 5711.666 kb on - strand, within PS417_26405 at 5711.929 kb on + strand at 5711.929 kb on + strand at 5711.929 kb on + strand at 5711.929 kb on + strand at 5711.930 kb on - strand at 5711.930 kb on - strand at 5711.930 kb on - strand at 5712.026 kb on + strand at 5712.027 kb on - strand at 5712.154 kb on + strand at 5712.176 kb on + strand at 5712.176 kb on + strand at 5712.176 kb on + strand at 5712.176 kb on + strand at 5712.177 kb on - strand at 5712.221 kb on + strand at 5712.221 kb on + strand at 5712.333 kb on + strand, within PS417_26410 at 5712.406 kb on - strand, within PS417_26410 at 5712.452 kb on + strand, within PS417_26410 at 5712.453 kb on - strand, within PS417_26410 at 5712.552 kb on + strand, within PS417_26410 at 5712.552 kb on + strand, within PS417_26410 at 5712.553 kb on - strand, within PS417_26410 at 5712.585 kb on + strand, within PS417_26410 at 5712.586 kb on - strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.708 kb on + strand, within PS417_26410 at 5712.709 kb on - strand, within PS417_26410 at 5712.709 kb on - strand, within PS417_26410 at 5712.747 kb on + strand, within PS417_26410 at 5712.748 kb on - strand, within PS417_26410 at 5712.808 kb on - strand, within PS417_26410 at 5712.808 kb on - strand, within PS417_26410 at 5712.825 kb on + strand, within PS417_26410 at 5712.825 kb on + strand, within PS417_26410 at 5712.826 kb on - strand, within PS417_26410 at 5712.826 kb on - strand, within PS417_26410 at 5712.826 kb on - strand, within PS417_26410 at 5712.826 kb on - strand, within PS417_26410 at 5712.826 kb on - strand, within PS417_26410 at 5712.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 60 mM remove 5,711,237 + PS417_26405 0.67 +0.4 5,711,238 - PS417_26405 0.67 +0.6 5,711,312 + PS417_26405 0.71 +0.1 5,711,312 + PS417_26405 0.71 -0.0 5,711,312 + PS417_26405 0.71 +0.2 5,711,489 + PS417_26405 0.79 -0.1 5,711,489 + PS417_26405 0.79 +0.6 5,711,489 + PS417_26405 0.79 -0.0 5,711,490 - PS417_26405 0.79 +0.1 5,711,653 + PS417_26405 0.87 +0.6 5,711,666 - PS417_26405 0.88 -0.3 5,711,929 + +1.1 5,711,929 + -0.7 5,711,929 + +0.2 5,711,929 + +0.0 5,711,930 - -0.1 5,711,930 - -0.0 5,711,930 - +0.8 5,712,026 + -0.2 5,712,027 - -0.4 5,712,154 + +0.3 5,712,176 + +0.2 5,712,176 + +0.8 5,712,176 + -1.6 5,712,176 + +0.1 5,712,177 - -1.4 5,712,221 + +1.2 5,712,221 + -0.8 5,712,333 + PS417_26410 0.14 -0.3 5,712,406 - PS417_26410 0.25 +0.4 5,712,452 + PS417_26410 0.32 -0.6 5,712,453 - PS417_26410 0.32 +0.0 5,712,552 + PS417_26410 0.47 +0.1 5,712,552 + PS417_26410 0.47 -0.3 5,712,553 - PS417_26410 0.47 -0.6 5,712,585 + PS417_26410 0.52 +0.2 5,712,586 - PS417_26410 0.52 +1.2 5,712,708 + PS417_26410 0.71 -0.2 5,712,708 + PS417_26410 0.71 +0.0 5,712,708 + PS417_26410 0.71 +0.0 5,712,708 + PS417_26410 0.71 +1.0 5,712,708 + PS417_26410 0.71 -1.9 5,712,708 + PS417_26410 0.71 +0.9 5,712,709 - PS417_26410 0.71 -0.2 5,712,709 - PS417_26410 0.71 -0.9 5,712,747 + PS417_26410 0.77 -0.4 5,712,748 - PS417_26410 0.77 -0.2 5,712,808 - PS417_26410 0.86 -0.5 5,712,808 - PS417_26410 0.86 -0.1 5,712,825 + PS417_26410 0.88 +1.1 5,712,825 + PS417_26410 0.88 -0.1 5,712,826 - PS417_26410 0.88 +0.4 5,712,826 - PS417_26410 0.88 +0.6 5,712,826 - PS417_26410 0.88 -0.5 5,712,826 - PS417_26410 0.88 +0.4 5,712,826 - PS417_26410 0.88 +0.2 5,712,905 - +0.3
Or see this region's nucleotide sequence