Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4818

Experiment: LB_plus_SM_buffer with 6F2_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4817 and GFF4818 are separated by 87 nucleotidesGFF4818 and GFF4819 are separated by 75 nucleotides GFF4817 - Secreted protein, at 116,985 to 118,067 GFF4817 GFF4818 - Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8), at 118,155 to 118,889 GFF4818 GFF4819 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 118,965 to 120,677 GFF4819 Position (kb) 118 119Strain fitness (log2 ratio) -1 0 1at 117.735 kb on - strand, within GFF4817at 117.871 kb on + strand, within GFF4817at 117.879 kb on - strand, within GFF4817at 117.999 kb on + strandat 118.131 kb on + strandat 118.131 kb on + strandat 118.139 kb on + strandat 119.721 kb on - strand, within GFF4819

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.001875 MOI
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117,735 - GFF4817 0.69 -0.3
117,871 + GFF4817 0.82 +0.8
117,879 - GFF4817 0.83 +0.2
117,999 + -1.2
118,131 + +0.7
118,131 + +0.3
118,139 + +0.3
119,721 - GFF4819 0.44 -0.4

Or see this region's nucleotide sequence