Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4761

Experiment: LB_plus_SM_buffer with 6F2_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4760 and GFF4761 overlap by 4 nucleotidesGFF4761 and GFF4762 are separated by 23 nucleotides GFF4760 - Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN), at 66,460 to 67,755 GFF4760 GFF4761 - Type III secretion system protein BsaR, at 67,752 to 68,159 GFF4761 GFF4762 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 68,183 to 70,240 GFF4762 Position (kb) 67 68 69Strain fitness (log2 ratio) -1 0 1at 66.777 kb on - strand, within GFF4760at 66.855 kb on - strand, within GFF4760at 67.049 kb on + strand, within GFF4760at 67.161 kb on + strand, within GFF4760at 67.162 kb on - strand, within GFF4760at 67.319 kb on - strand, within GFF4760at 67.380 kb on - strand, within GFF4760at 67.527 kb on - strand, within GFF4760at 67.594 kb on + strand, within GFF4760at 67.595 kb on - strand, within GFF4760at 67.696 kb on - strandat 67.730 kb on + strandat 67.731 kb on - strandat 67.860 kb on - strand, within GFF4761at 67.962 kb on + strand, within GFF4761at 68.005 kb on - strand, within GFF4761at 68.160 kb on - strandat 68.305 kb on + strandat 68.336 kb on + strandat 68.350 kb on + strandat 68.533 kb on + strand, within GFF4762at 68.656 kb on + strand, within GFF4762at 69.089 kb on - strand, within GFF4762at 69.150 kb on - strand, within GFF4762

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.001875 MOI
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66,777 - GFF4760 0.24 -0.0
66,855 - GFF4760 0.30 +0.6
67,049 + GFF4760 0.45 -0.2
67,161 + GFF4760 0.54 +0.0
67,162 - GFF4760 0.54 -0.1
67,319 - GFF4760 0.66 +0.3
67,380 - GFF4760 0.71 -1.6
67,527 - GFF4760 0.82 -0.3
67,594 + GFF4760 0.88 -1.0
67,595 - GFF4760 0.88 +0.7
67,696 - +0.4
67,730 + -1.3
67,731 - -0.5
67,860 - GFF4761 0.26 -0.0
67,962 + GFF4761 0.51 -0.5
68,005 - GFF4761 0.62 -0.6
68,160 - +0.6
68,305 + +0.7
68,336 + +0.4
68,350 + -0.3
68,533 + GFF4762 0.17 +0.2
68,656 + GFF4762 0.23 -0.3
69,089 - GFF4762 0.44 -0.3
69,150 - GFF4762 0.47 +0.3

Or see this region's nucleotide sequence