Strain Fitness in Pseudomonas simiae WCS417 around PS417_24015

Experiment: L-Lysine 60 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24005 and PS417_24010 are separated by 16 nucleotidesPS417_24010 and PS417_24015 are separated by 8 nucleotidesPS417_24015 and PS417_24020 are separated by 200 nucleotidesPS417_24020 and PS417_24025 are separated by 106 nucleotides PS417_24005: PS417_24005 - phosphoglucosamine mutase, at 5,196,631 to 5,197,968 _24005 PS417_24010: PS417_24010 - dihydropteroate synthase, at 5,197,985 to 5,198,836 _24010 PS417_24015: PS417_24015 - ATP-dependent metalloprotease, at 5,198,845 to 5,200,755 _24015 PS417_24020: PS417_24020 - 23S rRNA methyltransferase, at 5,200,956 to 5,201,606 _24020 PS417_24025: PS417_24025 - RNA-binding protein, at 5,201,713 to 5,202,021 _24025 Position (kb) 5198 5199 5200 5201Strain fitness (log2 ratio) -1 0 1at 5197.969 kb on - strandat 5197.969 kb on - strandat 5197.969 kb on - strandat 5197.969 kb on - strandat 5198.847 kb on - strandat 5198.847 kb on - strandat 5200.832 kb on - strandat 5200.835 kb on - strandat 5200.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 60 mM
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5,197,969 - -0.1
5,197,969 - -0.5
5,197,969 - -1.6
5,197,969 - -1.3
5,198,847 - -0.3
5,198,847 - -1.4
5,200,832 - -0.2
5,200,835 - -0.7
5,200,844 - -0.3

Or see this region's nucleotide sequence