Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4219

Experiment: LB_plus_SM_buffer with 6F2_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4218 and GFF4219 are separated by 22 nucleotidesGFF4219 and GFF4220 overlap by 17 nucleotidesGFF4220 and GFF4221 are separated by 205 nucleotides GFF4218 - hypothetical protein, at 27 to 185 GFF4218 GFF4219 - glycerol dehyrdratase activator, at 208 to 480 GFF4219 GFF4220 - Glycerol dehydratase reactivation factor large subunit, at 464 to 841 GFF4220 GFF4221 - FIG074102: hypothetical protein, at 1,047 to 1,274 GFF4221 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1at 0.132 kb on - strand, within GFF4218at 0.158 kb on + strand, within GFF4218at 0.174 kb on + strandat 0.175 kb on - strandat 0.175 kb on - strandat 0.327 kb on - strand, within GFF4219at 0.383 kb on + strand, within GFF4219at 0.499 kb on - strandat 0.515 kb on + strand, within GFF4220at 0.516 kb on - strand, within GFF4220at 0.743 kb on + strand, within GFF4220at 0.744 kb on - strand, within GFF4220at 0.769 kb on + strand, within GFF4220at 0.769 kb on + strand, within GFF4220at 0.770 kb on - strand, within GFF4220at 0.867 kb on + strandat 0.926 kb on + strandat 0.927 kb on - strandat 0.927 kb on - strandat 0.931 kb on - strandat 0.931 kb on - strandat 0.933 kb on + strandat 0.933 kb on + strandat 0.968 kb on + strandat 1.080 kb on + strand, within GFF4221at 1.242 kb on + strand, within GFF4221at 1.245 kb on - strand, within GFF4221

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.001875 MOI
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132 - GFF4218 0.66 +0.2
158 + GFF4218 0.82 +0.5
174 + -0.1
175 - +0.3
175 - -0.3
327 - GFF4219 0.44 -0.2
383 + GFF4219 0.64 -0.9
499 - -0.3
515 + GFF4220 0.13 -0.4
516 - GFF4220 0.14 +0.3
743 + GFF4220 0.74 +0.2
744 - GFF4220 0.74 +0.2
769 + GFF4220 0.81 +0.1
769 + GFF4220 0.81 +0.2
770 - GFF4220 0.81 -0.1
867 + +0.5
926 + -0.1
927 - +0.8
927 - -0.2
931 - -0.1
931 - +0.3
933 + -0.3
933 + -0.6
968 + -0.7
1,080 + GFF4221 0.14 +0.6
1,242 + GFF4221 0.86 +0.5
1,245 - GFF4221 0.87 +0.0

Or see this region's nucleotide sequence