Experiment: LB_plus_SM_buffer with 6F2_phage 0.001875 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3835 and GFF3836 overlap by 27 nucleotides GFF3836 and GFF3837 overlap by 4 nucleotides GFF3837 and GFF3838 overlap by 4 nucleotides
GFF3835 - Uncharacterized HTH-type transcriptional regulator YegW, at 104,627 to 105,373
GFF3835
GFF3836 - Uncharacterized sugar kinase YegV, PfkB family, at 105,347 to 106,312
GFF3836
GFF3837 - ADP-ribosylglycohydrolase YegU (EC 3.2.-.-), at 106,309 to 107,313
GFF3837
GFF3838 - Putative nucleoside transporter YegT, at 107,310 to 108,626
GFF3838
Position (kb)
106
107
108 Strain fitness (log2 ratio)
-1
0
1 at 105.332 kb on + strand at 105.349 kb on - strand at 105.761 kb on - strand, within GFF3836 at 106.287 kb on - strand at 106.287 kb on - strand at 106.421 kb on - strand, within GFF3837 at 106.681 kb on - strand, within GFF3837 at 106.822 kb on - strand, within GFF3837 at 107.052 kb on + strand, within GFF3837 at 107.053 kb on - strand, within GFF3837 at 107.053 kb on - strand, within GFF3837 at 107.316 kb on + strand at 107.586 kb on - strand, within GFF3838 at 107.684 kb on - strand, within GFF3838 at 107.899 kb on + strand, within GFF3838 at 107.900 kb on - strand, within GFF3838 at 108.000 kb on - strand, within GFF3838 at 108.114 kb on - strand, within GFF3838 at 108.121 kb on + strand, within GFF3838 at 108.121 kb on + strand, within GFF3838 at 108.121 kb on + strand, within GFF3838 at 108.122 kb on - strand, within GFF3838 at 108.122 kb on - strand, within GFF3838 at 108.267 kb on - strand, within GFF3838 at 108.268 kb on + strand, within GFF3838
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.001875 MOI remove 105,332 + -0.6 105,349 - -0.2 105,761 - GFF3836 0.43 -0.1 106,287 - -0.2 106,287 - +0.2 106,421 - GFF3837 0.11 -1.0 106,681 - GFF3837 0.37 -0.6 106,822 - GFF3837 0.51 +0.3 107,052 + GFF3837 0.74 -0.6 107,053 - GFF3837 0.74 -0.1 107,053 - GFF3837 0.74 +0.4 107,316 + -0.3 107,586 - GFF3838 0.21 -0.2 107,684 - GFF3838 0.28 -0.0 107,899 + GFF3838 0.45 -0.2 107,900 - GFF3838 0.45 +0.1 108,000 - GFF3838 0.52 +0.3 108,114 - GFF3838 0.61 -0.2 108,121 + GFF3838 0.62 -0.3 108,121 + GFF3838 0.62 +0.4 108,121 + GFF3838 0.62 -0.5 108,122 - GFF3838 0.62 -0.1 108,122 - GFF3838 0.62 -0.0 108,267 - GFF3838 0.73 -0.1 108,268 + GFF3838 0.73 -0.5
Or see this region's nucleotide sequence