Strain Fitness in Pseudomonas simiae WCS417 around PS417_16835

Experiment: L-Lysine 60 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16830 and PS417_16835 overlap by 1 nucleotidesPS417_16835 and PS417_16840 overlap by 4 nucleotides PS417_16830: PS417_16830 - monovalent cation/H+ antiporter subunit A, at 3,670,614 to 3,673,535 _16830 PS417_16835: PS417_16835 - monovalent cation/H+ antiporter subunit C, at 3,673,535 to 3,673,879 _16835 PS417_16840: PS417_16840 - monovalent cation/H+ antiporter subunit D, at 3,673,876 to 3,675,558 _16840 Position (kb) 3673 3674Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3672.765 kb on + strand, within PS417_16830at 3672.934 kb on - strandat 3673.197 kb on - strand, within PS417_16830at 3673.206 kb on + strand, within PS417_16830at 3673.206 kb on + strandat 3673.206 kb on + strand, within PS417_16830at 3673.207 kb on - strand, within PS417_16830at 3673.429 kb on + strandat 3673.485 kb on - strandat 3673.508 kb on - strandat 3673.736 kb on + strand, within PS417_16835at 3673.737 kb on - strand, within PS417_16835at 3674.032 kb on + strandat 3674.072 kb on - strand, within PS417_16840at 3674.251 kb on + strand, within PS417_16840at 3674.252 kb on - strand, within PS417_16840at 3674.320 kb on + strand, within PS417_16840at 3674.321 kb on - strand, within PS417_16840at 3674.374 kb on + strand, within PS417_16840at 3674.375 kb on - strand, within PS417_16840at 3674.375 kb on - strand, within PS417_16840at 3674.432 kb on - strand, within PS417_16840at 3674.734 kb on + strand, within PS417_16840at 3674.734 kb on + strand, within PS417_16840at 3674.735 kb on - strand, within PS417_16840at 3674.735 kb on - strand, within PS417_16840

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 60 mM
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3,672,765 + PS417_16830 0.74 -2.4
3,672,934 - -2.0
3,673,197 - PS417_16830 0.88 -2.8
3,673,206 + PS417_16830 0.89 -1.6
3,673,206 + -1.0
3,673,206 + PS417_16830 0.89 -2.4
3,673,207 - PS417_16830 0.89 -2.9
3,673,429 + -2.9
3,673,485 - -5.2
3,673,508 - -2.0
3,673,736 + PS417_16835 0.58 -4.3
3,673,737 - PS417_16835 0.59 -2.0
3,674,032 + -3.8
3,674,072 - PS417_16840 0.12 -3.0
3,674,251 + PS417_16840 0.22 -2.4
3,674,252 - PS417_16840 0.22 +0.3
3,674,320 + PS417_16840 0.26 -3.8
3,674,321 - PS417_16840 0.26 -3.2
3,674,374 + PS417_16840 0.30 -2.9
3,674,375 - PS417_16840 0.30 -2.4
3,674,375 - PS417_16840 0.30 -3.6
3,674,432 - PS417_16840 0.33 -2.1
3,674,734 + PS417_16840 0.51 -1.8
3,674,734 + PS417_16840 0.51 -2.0
3,674,735 - PS417_16840 0.51 -4.2
3,674,735 - PS417_16840 0.51 -2.1

Or see this region's nucleotide sequence