Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF280

Experiment: LB_plus_SM_buffer with 6F2_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF280 and GFF281 are separated by 121 nucleotides GFF280 - Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH, at 29 to 757 GFF280 GFF281 - Uncharacterized protein YidR, at 879 to 2,105 GFF281 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1at 0.218 kb on + strand, within GFF280at 0.219 kb on - strand, within GFF280at 0.426 kb on + strand, within GFF280at 0.459 kb on - strand, within GFF280at 0.613 kb on - strand, within GFF280at 0.620 kb on + strand, within GFF280at 0.621 kb on - strand, within GFF280at 0.621 kb on - strand, within GFF280at 0.815 kb on - strandat 0.815 kb on - strandat 0.843 kb on + strandat 0.843 kb on + strandat 0.844 kb on - strandat 0.917 kb on + strandat 0.917 kb on + strandat 0.918 kb on - strandat 0.918 kb on - strandat 0.929 kb on + strandat 0.968 kb on - strandat 0.968 kb on - strandat 1.104 kb on + strand, within GFF281at 1.104 kb on + strand, within GFF281at 1.104 kb on + strand, within GFF281at 1.112 kb on + strand, within GFF281at 1.200 kb on - strand, within GFF281at 1.220 kb on + strand, within GFF281at 1.221 kb on - strand, within GFF281at 1.301 kb on + strand, within GFF281at 1.301 kb on + strand, within GFF281at 1.305 kb on + strand, within GFF281at 1.307 kb on + strand, within GFF281at 1.421 kb on + strand, within GFF281at 1.422 kb on - strand, within GFF281at 1.485 kb on - strand, within GFF281at 1.591 kb on + strand, within GFF281at 1.694 kb on + strand, within GFF281at 1.700 kb on + strand, within GFF281

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.001875 MOI
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218 + GFF280 0.26 +0.1
219 - GFF280 0.26 +0.6
426 + GFF280 0.54 -0.4
459 - GFF280 0.59 +0.3
613 - GFF280 0.80 +0.1
620 + GFF280 0.81 +0.2
621 - GFF280 0.81 +0.3
621 - GFF280 0.81 +1.0
815 - +0.3
815 - +0.4
843 + -1.5
843 + -0.4
844 - -0.4
917 + +0.3
917 + -0.5
918 - -0.0
918 - -0.0
929 + -0.4
968 - +1.3
968 - -0.6
1,104 + GFF281 0.18 +0.4
1,104 + GFF281 0.18 +0.7
1,104 + GFF281 0.18 +0.4
1,112 + GFF281 0.19 -0.3
1,200 - GFF281 0.26 -0.2
1,220 + GFF281 0.28 -0.1
1,221 - GFF281 0.28 -0.3
1,301 + GFF281 0.34 -0.9
1,301 + GFF281 0.34 +0.1
1,305 + GFF281 0.35 -0.0
1,307 + GFF281 0.35 +0.3
1,421 + GFF281 0.44 +0.2
1,422 - GFF281 0.44 -0.4
1,485 - GFF281 0.49 +0.1
1,591 + GFF281 0.58 -0.4
1,694 + GFF281 0.66 -0.4
1,700 + GFF281 0.67 +0.1

Or see this region's nucleotide sequence