Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2473

Experiment: LB_plus_SM_buffer with 6F2_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2471 and GFF2472 overlap by 1 nucleotidesGFF2472 and GFF2473 are separated by 11 nucleotidesGFF2473 and GFF2474 are separated by 11 nucleotidesGFF2474 and GFF2475 overlap by 4 nucleotides GFF2471 - Holo-[acyl-carrier protein] synthase (EC 2.7.8.7), at 90,547 to 90,927 GFF2471 GFF2472 - 'Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)' transl_table=11, at 90,927 to 91,658 GFF2472 GFF2473 - DNA recombination and repair protein RecO, at 91,670 to 92,398 GFF2473 GFF2474 - GTP-binding protein Era, at 92,410 to 93,315 GFF2474 GFF2475 - Ribonuclease III (EC 3.1.26.3), at 93,312 to 94,049 GFF2475 Position (kb) 91 92 93Strain fitness (log2 ratio) -1 0 1at 91.761 kb on - strand, within GFF2473at 91.802 kb on + strand, within GFF2473at 91.802 kb on + strand, within GFF2473at 91.802 kb on + strand, within GFF2473at 91.802 kb on + strand, within GFF2473at 92.137 kb on + strand, within GFF2473at 92.221 kb on - strand, within GFF2473at 92.423 kb on - strandat 92.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.001875 MOI
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91,761 - GFF2473 0.12 -0.3
91,802 + GFF2473 0.18 -0.7
91,802 + GFF2473 0.18 -0.2
91,802 + GFF2473 0.18 -0.3
91,802 + GFF2473 0.18 -0.1
92,137 + GFF2473 0.64 -0.6
92,221 - GFF2473 0.76 +0.2
92,423 - -0.0
92,423 - -0.6

Or see this region's nucleotide sequence