Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1702

Experiment: LB_plus_SM_buffer with 6F2_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1702 and GFF1703 are separated by 11 nucleotides GFF1702 - Transcriptional regulator, GntR family, at 188 to 892 GFF1702 GFF1703 - Permeases of the major facilitator superfamily, at 904 to 2,331 GFF1703 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1at 0.099 kb on + strandat 0.151 kb on + strandat 0.154 kb on + strandat 0.154 kb on + strandat 0.154 kb on + strandat 0.234 kb on - strandat 0.267 kb on + strand, within GFF1702at 0.267 kb on + strand, within GFF1702at 0.268 kb on - strand, within GFF1702at 0.278 kb on + strand, within GFF1702at 0.326 kb on + strand, within GFF1702at 0.382 kb on + strand, within GFF1702at 0.382 kb on + strand, within GFF1702at 0.391 kb on - strand, within GFF1702at 0.520 kb on + strand, within GFF1702at 0.521 kb on - strand, within GFF1702at 0.676 kb on + strand, within GFF1702at 0.677 kb on - strand, within GFF1702at 0.677 kb on - strand, within GFF1702at 0.677 kb on - strand, within GFF1702at 0.680 kb on + strand, within GFF1702at 0.723 kb on + strand, within GFF1702at 0.746 kb on + strand, within GFF1702at 0.747 kb on - strand, within GFF1702at 0.747 kb on - strand, within GFF1702at 0.764 kb on + strand, within GFF1702at 0.777 kb on + strand, within GFF1702at 0.864 kb on + strandat 0.886 kb on + strandat 1.059 kb on + strand, within GFF1703at 1.060 kb on - strand, within GFF1703at 1.067 kb on - strand, within GFF1703at 1.083 kb on + strand, within GFF1703at 1.083 kb on + strand, within GFF1703at 1.084 kb on - strand, within GFF1703at 1.088 kb on + strand, within GFF1703at 1.152 kb on - strand, within GFF1703at 1.162 kb on - strand, within GFF1703at 1.226 kb on + strand, within GFF1703at 1.226 kb on + strand, within GFF1703at 1.226 kb on + strand, within GFF1703at 1.226 kb on + strand, within GFF1703at 1.227 kb on - strand, within GFF1703at 1.227 kb on - strand, within GFF1703at 1.274 kb on + strand, within GFF1703at 1.340 kb on + strand, within GFF1703at 1.374 kb on - strand, within GFF1703at 1.414 kb on - strand, within GFF1703at 1.416 kb on + strand, within GFF1703at 1.444 kb on + strand, within GFF1703at 1.445 kb on - strand, within GFF1703at 1.445 kb on - strand, within GFF1703at 1.445 kb on - strand, within GFF1703at 1.445 kb on - strand, within GFF1703at 1.457 kb on - strand, within GFF1703at 1.457 kb on - strand, within GFF1703at 1.457 kb on - strand, within GFF1703at 1.457 kb on - strand, within GFF1703at 1.459 kb on - strand, within GFF1703at 1.609 kb on - strand, within GFF1703at 1.619 kb on + strand, within GFF1703at 1.664 kb on + strand, within GFF1703at 1.665 kb on - strand, within GFF1703at 1.836 kb on + strand, within GFF1703at 1.837 kb on - strand, within GFF1703at 1.837 kb on - strand, within GFF1703at 1.837 kb on - strand, within GFF1703at 1.856 kb on + strand, within GFF1703at 1.868 kb on + strand, within GFF1703at 1.868 kb on + strand, within GFF1703

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.001875 MOI
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99 + -0.5
151 + -0.1
154 + +0.3
154 + -0.0
154 + -0.2
234 - +0.1
267 + GFF1702 0.11 -0.4
267 + GFF1702 0.11 -0.2
268 - GFF1702 0.11 +0.3
278 + GFF1702 0.13 +0.0
326 + GFF1702 0.20 +0.2
382 + GFF1702 0.28 -0.0
382 + GFF1702 0.28 +0.8
391 - GFF1702 0.29 -0.8
520 + GFF1702 0.47 +0.1
521 - GFF1702 0.47 -0.5
676 + GFF1702 0.69 -0.1
677 - GFF1702 0.69 -0.4
677 - GFF1702 0.69 -0.2
677 - GFF1702 0.69 -1.0
680 + GFF1702 0.70 +0.0
723 + GFF1702 0.76 -0.4
746 + GFF1702 0.79 -0.3
747 - GFF1702 0.79 -0.1
747 - GFF1702 0.79 -0.4
764 + GFF1702 0.82 -0.4
777 + GFF1702 0.84 +0.6
864 + -0.3
886 + -0.1
1,059 + GFF1703 0.11 -0.1
1,060 - GFF1703 0.11 +0.4
1,067 - GFF1703 0.11 -0.5
1,083 + GFF1703 0.13 +0.6
1,083 + GFF1703 0.13 +0.3
1,084 - GFF1703 0.13 +0.5
1,088 + GFF1703 0.13 +0.6
1,152 - GFF1703 0.17 +1.1
1,162 - GFF1703 0.18 +0.2
1,226 + GFF1703 0.23 +1.5
1,226 + GFF1703 0.23 +0.4
1,226 + GFF1703 0.23 -0.0
1,226 + GFF1703 0.23 -0.5
1,227 - GFF1703 0.23 +0.5
1,227 - GFF1703 0.23 -0.1
1,274 + GFF1703 0.26 -0.5
1,340 + GFF1703 0.31 +0.7
1,374 - GFF1703 0.33 -0.1
1,414 - GFF1703 0.36 -1.0
1,416 + GFF1703 0.36 +0.3
1,444 + GFF1703 0.38 -0.6
1,445 - GFF1703 0.38 -0.3
1,445 - GFF1703 0.38 -0.3
1,445 - GFF1703 0.38 -0.5
1,445 - GFF1703 0.38 +0.0
1,457 - GFF1703 0.39 +0.2
1,457 - GFF1703 0.39 -0.0
1,457 - GFF1703 0.39 +0.2
1,457 - GFF1703 0.39 +0.5
1,459 - GFF1703 0.39 +0.4
1,609 - GFF1703 0.49 +0.4
1,619 + GFF1703 0.50 +0.5
1,664 + GFF1703 0.53 +0.2
1,665 - GFF1703 0.53 +0.4
1,836 + GFF1703 0.65 +0.2
1,837 - GFF1703 0.65 -0.0
1,837 - GFF1703 0.65 +0.5
1,837 - GFF1703 0.65 +0.1
1,856 + GFF1703 0.67 -0.2
1,868 + GFF1703 0.68 +0.3
1,868 + GFF1703 0.68 -0.7

Or see this region's nucleotide sequence