Strain Fitness in Pseudomonas simiae WCS417 around PS417_07480

Experiment: L-Lysine 60 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07470 and PS417_07475 overlap by 4 nucleotidesPS417_07475 and PS417_07480 overlap by 4 nucleotidesPS417_07480 and PS417_07485 are separated by 117 nucleotidesPS417_07485 and PS417_07490 are separated by 41 nucleotides PS417_07470: PS417_07470 - hypothetical protein, at 1,642,742 to 1,643,482 _07470 PS417_07475: PS417_07475 - allophanate hydrolase, at 1,643,479 to 1,644,183 _07475 PS417_07480: PS417_07480 - allophanate hydrolase, at 1,644,180 to 1,645,088 _07480 PS417_07485: PS417_07485 - hypothetical protein, at 1,645,206 to 1,645,745 _07485 PS417_07490: PS417_07490 - von Willebrand factor A, at 1,645,787 to 1,646,965 _07490 Position (kb) 1644 1645 1646Strain fitness (log2 ratio) -2 -1 0 1 2at 1643.217 kb on - strand, within PS417_07470at 1643.223 kb on + strand, within PS417_07470at 1643.415 kb on + strandat 1643.857 kb on + strand, within PS417_07475at 1644.035 kb on + strand, within PS417_07475at 1644.146 kb on + strandat 1645.147 kb on - strandat 1645.213 kb on - strandat 1645.224 kb on + strandat 1645.224 kb on + strandat 1645.225 kb on - strandat 1645.225 kb on - strandat 1645.225 kb on - strandat 1645.252 kb on + strandat 1645.252 kb on + strandat 1645.480 kb on - strand, within PS417_07485at 1645.480 kb on - strand, within PS417_07485at 1645.489 kb on + strand, within PS417_07485at 1645.511 kb on + strand, within PS417_07485at 1645.577 kb on + strand, within PS417_07485at 1645.577 kb on + strand, within PS417_07485at 1645.578 kb on - strand, within PS417_07485at 1645.578 kb on - strand, within PS417_07485at 1645.578 kb on - strand, within PS417_07485at 1645.578 kb on - strand, within PS417_07485at 1645.578 kb on - strand, within PS417_07485at 1645.578 kb on - strand, within PS417_07485at 1645.599 kb on + strand, within PS417_07485at 1645.599 kb on + strand, within PS417_07485at 1645.600 kb on - strand, within PS417_07485at 1645.600 kb on - strand, within PS417_07485at 1645.840 kb on - strandat 1645.885 kb on + strandat 1645.885 kb on + strandat 1645.885 kb on + strandat 1645.886 kb on - strandat 1645.888 kb on - strandat 1645.935 kb on + strand, within PS417_07490at 1645.935 kb on + strand, within PS417_07490at 1645.935 kb on + strand, within PS417_07490at 1645.935 kb on + strand, within PS417_07490at 1645.935 kb on + strand, within PS417_07490at 1645.965 kb on + strand, within PS417_07490at 1645.965 kb on + strand, within PS417_07490at 1645.965 kb on + strand, within PS417_07490at 1645.965 kb on + strand, within PS417_07490at 1645.965 kb on + strand, within PS417_07490at 1646.070 kb on + strand, within PS417_07490at 1646.071 kb on - strand, within PS417_07490at 1646.071 kb on - strand, within PS417_07490at 1646.071 kb on - strand, within PS417_07490

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 60 mM
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1,643,217 - PS417_07470 0.64 -0.7
1,643,223 + PS417_07470 0.65 +0.8
1,643,415 + +0.2
1,643,857 + PS417_07475 0.54 +0.5
1,644,035 + PS417_07475 0.79 -0.7
1,644,146 + +0.3
1,645,147 - +0.2
1,645,213 - -1.2
1,645,224 + -0.7
1,645,224 + -0.2
1,645,225 - -0.2
1,645,225 - -0.9
1,645,225 - -0.2
1,645,252 + +0.8
1,645,252 + +0.1
1,645,480 - PS417_07485 0.51 +0.6
1,645,480 - PS417_07485 0.51 +0.1
1,645,489 + PS417_07485 0.52 +0.6
1,645,511 + PS417_07485 0.56 -0.7
1,645,577 + PS417_07485 0.69 +0.4
1,645,577 + PS417_07485 0.69 -0.7
1,645,578 - PS417_07485 0.69 -1.0
1,645,578 - PS417_07485 0.69 -0.7
1,645,578 - PS417_07485 0.69 +1.1
1,645,578 - PS417_07485 0.69 -0.3
1,645,578 - PS417_07485 0.69 +0.2
1,645,578 - PS417_07485 0.69 -0.7
1,645,599 + PS417_07485 0.73 +0.3
1,645,599 + PS417_07485 0.73 -2.0
1,645,600 - PS417_07485 0.73 -0.3
1,645,600 - PS417_07485 0.73 -1.0
1,645,840 - -0.4
1,645,885 + +0.5
1,645,885 + -0.0
1,645,885 + +0.8
1,645,886 - +0.4
1,645,888 - -0.2
1,645,935 + PS417_07490 0.13 -0.0
1,645,935 + PS417_07490 0.13 +0.6
1,645,935 + PS417_07490 0.13 +0.2
1,645,935 + PS417_07490 0.13 -0.2
1,645,935 + PS417_07490 0.13 +0.8
1,645,965 + PS417_07490 0.15 +0.3
1,645,965 + PS417_07490 0.15 +0.5
1,645,965 + PS417_07490 0.15 +2.4
1,645,965 + PS417_07490 0.15 +0.1
1,645,965 + PS417_07490 0.15 +0.3
1,646,070 + PS417_07490 0.24 +0.8
1,646,071 - PS417_07490 0.24 +0.3
1,646,071 - PS417_07490 0.24 +0.2
1,646,071 - PS417_07490 0.24 -0.3

Or see this region's nucleotide sequence