Strain Fitness in Escherichia coli BW25113 around b3893

Experiment: 2,4-Dinitrophenol 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2,4-Dinitrophenol 2 mM
4,078,981	-	fdhE	b3891	0.71	-2.3
4,078,981	-	fdhE	b3891	0.71	-3.6
4,078,991	-	fdhE	b3891	0.72	-3.1
4,079,019	+	fdhE	b3891	0.75	-3.8
4,079,038	-	fdhE	b3891	0.77	-2.8
4,079,042	+	fdhE	b3891	0.77	-1.2
4,079,058	+	fdhE	b3891	0.79	-1.4
4,079,064	-	fdhE	b3891	0.80	-1.9
4,079,092	+	fdhE	b3891	0.83	-2.3
4,079,120	-	fdhE	b3891	0.86	-2.8
4,079,195	-				-0.4
4,079,195	-				+0.3
4,079,195	-				-0.6
4,079,198	-				-0.2
4,079,280	+				-1.6
4,079,291	-				-1.8
4,079,295	-				-3.0
4,079,295	-				-0.2
4,079,309	-				-1.3
4,079,325	+	fdoI	b3892	0.12	-1.4
4,079,325	-	fdoI	b3892	0.12	-1.7
4,079,325	-	fdoI	b3892	0.12	-3.6
4,079,340	-	fdoI	b3892	0.14	-2.4
4,079,343	-	fdoI	b3892	0.15	-3.1
4,079,380	+	fdoI	b3892	0.21	-1.8
4,079,380	+	fdoI	b3892	0.21	-2.1
4,079,380	+	fdoI	b3892	0.21	-0.5
4,079,388	-	fdoI	b3892	0.22	-0.4
4,079,388	-	fdoI	b3892	0.22	-0.1
4,079,438	-	fdoI	b3892	0.30	-1.9
4,079,581	-	fdoI	b3892	0.52	-2.5
4,079,581	-	fdoI	b3892	0.52	-2.6
4,079,581	-	fdoI	b3892	0.52	-1.5
4,079,581	-	fdoI	b3892	0.52	-1.1
4,079,586	-	fdoI	b3892	0.53	-1.6
4,079,626	+	fdoI	b3892	0.59	-2.4
4,079,654	-	fdoI	b3892	0.64	-2.1
4,079,654	-	fdoI	b3892	0.64	-1.2
4,079,665	-	fdoI	b3892	0.66	-0.7
4,079,665	-	fdoI	b3892	0.66	-1.2
4,079,680	-	fdoI	b3892	0.68	-1.6
4,079,689	+	fdoI	b3892	0.69	-2.0
4,079,741	+	fdoI	b3892	0.78	-3.9
4,079,761	+	fdoI	b3892	0.81	-1.4
4,079,766	-	fdoI	b3892	0.81	-2.7
4,079,769	-	fdoI	b3892	0.82	+0.4
4,079,769	-	fdoI	b3892	0.82	-2.3
4,079,818	-	fdoI	b3892	0.90	-1.4
4,079,832	-				-2.5
4,079,903	-				-0.6
4,079,903	-				-1.1
4,079,930	-				-2.1
4,079,930	-				-2.1
4,079,937	+				-1.9
4,079,945	-				-2.6
4,079,945	-				+0.4
4,079,945	-				-2.3
4,079,945	-				-0.9
4,079,960	-				-1.3
4,079,965	+				-1.1
4,079,999	-	fdoH	b3893	0.13	-0.3
4,079,999	-	fdoH	b3893	0.13	-1.9
4,080,077	-	fdoH	b3893	0.22	-1.3
4,080,096	+	fdoH	b3893	0.24	-1.1
4,080,096	+	fdoH	b3893	0.24	-1.3
4,080,096	+	fdoH	b3893	0.24	-1.8
4,080,104	+	fdoH	b3893	0.25	-0.7
4,080,104	-	fdoH	b3893	0.25	-2.0
4,080,105	-	fdoH	b3893	0.25	-1.1
4,080,121	-	fdoH	b3893	0.27	-1.9
4,080,138	+	fdoH	b3893	0.29	-2.0
4,080,141	+	fdoH	b3893	0.29	-1.4
4,080,165	-	fdoH	b3893	0.32	-2.2
4,080,169	+	fdoH	b3893	0.32	+0.1
4,080,278	+	fdoH	b3893	0.44	-0.9
4,080,288	+	fdoH	b3893	0.45	-1.4
4,080,299	+	fdoH	b3893	0.46	+0.0
4,080,299	+	fdoH	b3893	0.46	-2.0
4,080,345	+	fdoH	b3893	0.51	+0.2
4,080,394	+	fdoH	b3893	0.57	-0.5
4,080,395	-	fdoH	b3893	0.57	-1.0
4,080,410	-	fdoH	b3893	0.59	-0.1
4,080,415	+	fdoH	b3893	0.59	-2.5
4,080,415	+	fdoH	b3893	0.59	-1.0
4,080,460	-	fdoH	b3893	0.64	+0.1
4,080,460	-	fdoH	b3893	0.64	-1.6
4,080,462	+	fdoH	b3893	0.64	-1.9
4,080,480	-	fdoH	b3893	0.66	-0.6
4,080,486	-	fdoH	b3893	0.67	-1.0
4,080,486	-	fdoH	b3893	0.67	-2.9
4,080,540	+	fdoH	b3893	0.73	+0.2
4,080,548	-	fdoH	b3893	0.74	-1.6
4,080,571	+	fdoH	b3893	0.77	-0.6
4,080,582	+	fdoH	b3893	0.78	-1.5
4,080,582	+	fdoH	b3893	0.78	-0.1
4,080,598	-	fdoH	b3893	0.80	-2.2
4,080,598	-	fdoH	b3893	0.80	-2.6
4,080,598	-	fdoH	b3893	0.80	-2.2
4,080,608	+	fdoH	b3893	0.81	-2.1
4,080,632	-	fdoH	b3893	0.83	-2.0
4,080,649	-	fdoH	b3893	0.85	-3.2
4,080,653	+	fdoH	b3893	0.86	-1.9
4,080,653	+	fdoH	b3893	0.86	-1.1
4,080,670	+	fdoH	b3893	0.87	-0.9
4,080,670	+	fdoH	b3893	0.87	-2.4
4,080,707	-				-0.8
4,080,707	-				-1.3
4,080,786	-				-1.2
4,080,786	-				-1.4
4,080,792	+				-0.7
4,080,831	-				-0.7
4,080,842	+				-1.8
4,080,864	-				-1.3
4,080,904	+				-1.1
4,080,926	+				-0.4
4,081,022	-				-2.5
4,081,022	-				-1.6
4,081,025	+				-1.2
4,081,038	+				-0.2
4,081,038	+				-2.6
4,081,041	-				-2.0
4,081,041	-				-0.9
4,081,047	-				-1.0
4,081,123	+	fdoG	b3894	0.11	-2.0
4,081,123	+	fdoG	b3894	0.11	-3.0
4,081,189	+	fdoG	b3894	0.13	-1.5
4,081,189	+	fdoG	b3894	0.13	-0.9
4,081,189	+	fdoG	b3894	0.13	-3.1
4,081,194	+	fdoG	b3894	0.13	-0.6
4,081,315	+	fdoG	b3894	0.17	-1.1
4,081,315	+	fdoG	b3894	0.17	-1.9
4,081,321	+	fdoG	b3894	0.17	-0.9
4,081,323	+	fdoG	b3894	0.17	-1.4
4,081,416	+	fdoG	b3894	0.20	-1.9
4,081,438	-	fdoG	b3894	0.21	+1.1
4,081,443	-	fdoG	b3894	0.21	-2.4
4,081,443	-	fdoG	b3894	0.21	-1.2
4,081,468	+	fdoG	b3894	0.22	-1.4
4,081,482	-	fdoG	b3894	0.23	-1.9
4,081,537	-	fdoG	b3894	0.24	-1.6
4,081,545	+	fdoG	b3894	0.25	-2.1
4,081,576	+	fdoG	b3894	0.26	-1.7
4,081,612	-	fdoG	b3894	0.27	-1.0
4,081,612	-	fdoG	b3894	0.27	-1.5
4,081,620	-	fdoG	b3894	0.27	-2.6
4,081,646	-	fdoG	b3894	0.28	-1.6
4,081,652	-	fdoG	b3894	0.28	-1.5
4,081,654	-	fdoG	b3894	0.28	-3.0
4,081,654	-	fdoG	b3894	0.28	-1.8
4,081,687	-	fdoG	b3894	0.29	-0.8
4,081,753	-	fdoG	b3894	0.31	-0.4
4,081,753	-	fdoG	b3894	0.31	-2.1