Strain Fitness in Escherichia coli BW25113 around b3856
Experiment: 2,4-Dinitrophenol 2 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2,4-Dinitrophenol 2 mM |
---|---|---|---|---|---|
remove | |||||
4,038,917 | + | +0.4 | |||
4,038,982 | - | mobB | b3856 | 0.10 | +0.2 |
4,039,000 | - | mobB | b3856 | 0.13 | +0.5 |
4,039,014 | - | mobB | b3856 | 0.16 | -1.0 |
4,039,036 | + | mobB | b3856 | 0.20 | +0.7 |
4,039,104 | + | mobB | b3856 | 0.33 | -0.1 |
4,039,104 | + | mobB | b3856 | 0.33 | -0.0 |
4,039,150 | - | mobB | b3856 | 0.42 | -0.3 |
4,039,192 | - | mobB | b3856 | 0.50 | -0.2 |
4,039,207 | - | mobB | b3856 | 0.53 | +0.2 |
4,039,226 | + | mobB | b3856 | 0.56 | +0.0 |
4,039,271 | - | mobB | b3856 | 0.65 | +0.3 |
4,039,272 | + | mobB | b3856 | 0.65 | +0.5 |
4,039,279 | + | mobB | b3856 | 0.66 | +0.4 |
4,039,282 | - | mobB | b3856 | 0.67 | +0.5 |
4,039,318 | - | mobB | b3856 | 0.74 | -0.7 |
4,039,318 | - | mobB | b3856 | 0.74 | -1.3 |
4,039,347 | - | mobB | b3856 | 0.79 | -0.2 |
4,039,414 | + | +1.2 | |||
4,039,540 | + | mobA | b3857 | 0.17 | -0.7 |
4,039,571 | - | mobA | b3857 | 0.23 | -1.9 |
4,039,642 | + | mobA | b3857 | 0.35 | -2.0 |
4,039,717 | - | mobA | b3857 | 0.48 | -1.5 |
4,039,774 | - | mobA | b3857 | 0.57 | -1.9 |
4,039,774 | - | mobA | b3857 | 0.57 | -0.2 |
4,039,801 | - | mobA | b3857 | 0.62 | -1.8 |
4,039,821 | + | mobA | b3857 | 0.65 | -1.8 |
4,039,821 | + | mobA | b3857 | 0.65 | -0.8 |
4,039,821 | + | mobA | b3857 | 0.65 | -2.5 |
4,039,930 | + | mobA | b3857 | 0.84 | -2.9 |
4,039,962 | + | mobA | b3857 | 0.90 | -1.3 |
4,039,968 | - | -1.6 | |||
4,039,968 | - | -1.2 | |||
4,040,054 | + | +0.4 | |||
4,040,080 | + | +0.3 | |||
4,040,082 | - | +0.0 | |||
4,040,127 | + | yihD | b3858 | 0.13 | +0.3 |
4,040,236 | + | yihD | b3858 | 0.53 | +0.6 |
4,040,236 | + | yihD | b3858 | 0.53 | -0.7 |
4,040,249 | + | yihD | b3858 | 0.58 | +0.6 |
4,040,339 | + | -1.1 | |||
4,040,405 | - | -0.4 | |||
4,040,436 | + | +0.3 | |||
4,040,436 | + | +1.1 |
Or see this region's nucleotide sequence