Strain Fitness in Escherichia coli BW25113 around b2214
Experiment: 2,4-Dinitrophenol 2 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2,4-Dinitrophenol 2 mM |
---|---|---|---|---|---|
remove | |||||
2,307,549 | - | ada | b2213 | 0.17 | +0.3 |
2,307,562 | - | ada | b2213 | 0.19 | -0.8 |
2,307,583 | + | ada | b2213 | 0.21 | -0.5 |
2,307,593 | + | ada | b2213 | 0.22 | -0.2 |
2,307,849 | - | ada | b2213 | 0.46 | +0.6 |
2,308,153 | + | ada | b2213 | 0.74 | +0.1 |
2,308,153 | + | ada | b2213 | 0.74 | +0.2 |
2,308,162 | + | ada | b2213 | 0.75 | -0.3 |
2,308,327 | + | +0.0 | |||
2,308,337 | - | +0.9 | |||
2,308,651 | + | yojL | b2214 | 0.14 | +0.2 |
2,308,661 | - | +1.0 | |||
2,308,661 | - | yojL | b2214 | 0.15 | -0.6 |
2,308,745 | - | yojL | b2214 | 0.23 | -0.3 |
2,308,784 | - | yojL | b2214 | 0.27 | -0.1 |
2,308,796 | - | yojL | b2214 | 0.28 | +0.2 |
2,308,916 | + | yojL | b2214 | 0.39 | +0.1 |
2,308,916 | + | yojL | b2214 | 0.39 | -0.4 |
2,308,964 | - | yojL | b2214 | 0.44 | -0.7 |
2,308,964 | - | yojL | b2214 | 0.44 | -0.0 |
2,309,070 | - | yojL | b2214 | 0.54 | -1.3 |
2,309,100 | + | yojL | b2214 | 0.57 | -0.3 |
2,309,123 | - | yojL | b2214 | 0.59 | -0.9 |
2,309,286 | - | yojL | b2214 | 0.74 | +1.0 |
2,309,286 | - | yojL | b2214 | 0.74 | +0.8 |
2,309,711 | - | -0.8 | |||
2,309,963 | + | ompC | b2215 | 0.27 | -1.9 |
2,309,981 | + | ompC | b2215 | 0.28 | -1.3 |
2,310,013 | + | ompC | b2215 | 0.31 | -1.6 |
2,310,044 | + | ompC | b2215 | 0.34 | -1.9 |
2,310,052 | - | ompC | b2215 | 0.35 | -1.3 |
2,310,052 | - | +0.9 | |||
2,310,081 | - | ompC | b2215 | 0.37 | -3.2 |
2,310,091 | - | ompC | b2215 | 0.38 | -1.9 |
2,310,155 | + | ompC | b2215 | 0.44 | -1.5 |
2,310,192 | + | ompC | b2215 | 0.47 | -0.9 |
2,310,277 | + | ompC | b2215 | 0.55 | -1.0 |
2,310,340 | + | ompC | b2215 | 0.61 | -2.8 |
2,310,362 | - | ompC | b2215 | 0.63 | -1.7 |
2,310,362 | - | ompC | b2215 | 0.63 | -0.7 |
2,310,362 | - | ompC | b2215 | 0.63 | -1.3 |
2,310,442 | + | ompC | b2215 | 0.70 | -2.2 |
2,310,442 | + | ompC | b2215 | 0.70 | -2.6 |
2,310,490 | + | ompC | b2215 | 0.74 | -1.7 |
2,310,531 | + | ompC | b2215 | 0.78 | -2.9 |
2,310,532 | + | ompC | b2215 | 0.78 | -3.3 |
2,310,538 | - | ompC | b2215 | 0.79 | -1.1 |
2,310,538 | - | ompC | b2215 | 0.79 | -1.2 |
Or see this region's nucleotide sequence