Strain Fitness in Escherichia coli BW25113 around b2178

Experiment: 2,4-Dinitrophenol 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyejA and yejB are separated by 0 nucleotidesyejB and yejE overlap by 1 nucleotides b2177: yejA - orf, hypothetical protein (VIMSS), at 2,270,386 to 2,272,200 yejA b2178: yejB - predicted oligopeptide transporter subunit (NCBI), at 2,272,201 to 2,273,295 yejB b2179: yejE - predicted oligopeptide transporter subunit (NCBI), at 2,273,295 to 2,274,320 yejE Position (kb) 2272 2273 2274Strain fitness (log2 ratio) -2 -1 0 1at 2271.210 kb on - strand, within yejAat 2271.210 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.240 kb on - strand, within yejAat 2271.295 kb on + strand, within yejAat 2271.300 kb on + strand, within yejAat 2271.308 kb on - strand, within yejAat 2271.308 kb on - strand, within yejAat 2271.363 kb on + strand, within yejAat 2271.561 kb on + strand, within yejAat 2271.574 kb on + strand, within yejAat 2271.639 kb on - strand, within yejAat 2271.639 kb on - strand, within yejAat 2271.639 kb on - strand, within yejAat 2271.639 kb on - strand, within yejAat 2271.639 kb on - strand, within yejAat 2271.641 kb on - strand, within yejAat 2271.657 kb on + strand, within yejAat 2271.707 kb on + strand, within yejAat 2271.729 kb on - strand, within yejAat 2271.730 kb on + strand, within yejAat 2271.730 kb on + strand, within yejAat 2271.826 kb on - strand, within yejAat 2271.871 kb on - strand, within yejAat 2271.925 kb on + strand, within yejAat 2272.009 kb on + strand, within yejAat 2272.117 kb on + strandat 2272.126 kb on - strandat 2272.126 kb on - strandat 2272.152 kb on + strandat 2272.152 kb on + strandat 2272.255 kb on - strandat 2272.348 kb on + strand, within yejBat 2272.348 kb on + strand, within yejBat 2272.385 kb on - strand, within yejBat 2272.583 kb on - strand, within yejBat 2272.597 kb on + strand, within yejBat 2272.599 kb on + strand, within yejBat 2272.637 kb on + strand, within yejBat 2272.686 kb on - strand, within yejBat 2272.686 kb on - strand, within yejBat 2272.970 kb on + strand, within yejBat 2273.143 kb on + strand, within yejBat 2273.198 kb on - strandat 2273.198 kb on - strandat 2273.234 kb on - strandat 2273.260 kb on - strandat 2273.260 kb on - strandat 2273.260 kb on - strandat 2273.566 kb on + strand, within yejEat 2273.569 kb on + strand, within yejEat 2273.569 kb on + strand, within yejEat 2273.579 kb on - strand, within yejEat 2273.596 kb on + strand, within yejEat 2273.695 kb on + strand, within yejEat 2273.695 kb on + strand, within yejEat 2273.836 kb on + strand, within yejEat 2273.887 kb on - strand, within yejEat 2273.947 kb on - strand, within yejEat 2274.170 kb on + strand, within yejEat 2274.170 kb on + strand, within yejEat 2274.266 kb on - strandat 2274.294 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2,4-Dinitrophenol 2 mM
remove
2,271,210 - yejA b2177 0.45 -0.6
2,271,210 - yejA b2177 0.45 -0.2
2,271,239 - yejA b2177 0.47 -0.4
2,271,239 - yejA b2177 0.47 -0.0
2,271,239 - yejA b2177 0.47 -0.4
2,271,239 - yejA b2177 0.47 +0.4
2,271,240 - yejA b2177 0.47 -0.6
2,271,295 + yejA b2177 0.50 -0.5
2,271,300 + yejA b2177 0.50 -0.4
2,271,308 - yejA b2177 0.51 -0.5
2,271,308 - yejA b2177 0.51 +0.9
2,271,363 + yejA b2177 0.54 -0.2
2,271,561 + yejA b2177 0.65 -0.0
2,271,574 + yejA b2177 0.65 -0.1
2,271,639 - yejA b2177 0.69 -1.4
2,271,639 - yejA b2177 0.69 +0.4
2,271,639 - yejA b2177 0.69 -1.0
2,271,639 - yejA b2177 0.69 +0.1
2,271,639 - yejA b2177 0.69 -0.4
2,271,641 - yejA b2177 0.69 -0.5
2,271,657 + yejA b2177 0.70 +0.7
2,271,707 + yejA b2177 0.73 -1.2
2,271,729 - yejA b2177 0.74 -2.0
2,271,730 + yejA b2177 0.74 -0.9
2,271,730 + yejA b2177 0.74 +0.3
2,271,826 - yejA b2177 0.79 -2.0
2,271,871 - yejA b2177 0.82 -1.2
2,271,925 + yejA b2177 0.85 -1.9
2,272,009 + yejA b2177 0.89 -1.4
2,272,117 + +0.0
2,272,126 - +0.0
2,272,126 - -0.6
2,272,152 + +0.3
2,272,152 + -0.8
2,272,255 - -1.6
2,272,348 + yejB b2178 0.13 -1.6
2,272,348 + yejB b2178 0.13 -0.9
2,272,385 - yejB b2178 0.17 -0.6
2,272,583 - yejB b2178 0.35 -0.9
2,272,597 + yejB b2178 0.36 -0.5
2,272,599 + yejB b2178 0.36 -0.6
2,272,637 + yejB b2178 0.40 -1.0
2,272,686 - yejB b2178 0.44 -0.7
2,272,686 - yejB b2178 0.44 -0.3
2,272,970 + yejB b2178 0.70 -0.1
2,273,143 + yejB b2178 0.86 -0.4
2,273,198 - -1.0
2,273,198 - +0.5
2,273,234 - -1.5
2,273,260 - +0.2
2,273,260 - -0.4
2,273,260 - -1.1
2,273,566 + yejE b2179 0.26 +0.6
2,273,569 + yejE b2179 0.27 -0.8
2,273,569 + yejE b2179 0.27 -1.0
2,273,579 - yejE b2179 0.28 -0.7
2,273,596 + yejE b2179 0.29 -0.5
2,273,695 + yejE b2179 0.39 -0.9
2,273,695 + yejE b2179 0.39 -0.5
2,273,836 + yejE b2179 0.53 +0.0
2,273,887 - yejE b2179 0.58 -0.3
2,273,947 - yejE b2179 0.64 -0.9
2,274,170 + yejE b2179 0.85 -0.9
2,274,170 + yejE b2179 0.85 -1.1
2,274,266 - -1.3
2,274,294 + -2.2

Or see this region's nucleotide sequence