Strain Fitness in Escherichia coli BW25113 around b2176
Experiment: 2,4-Dinitrophenol 2 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2,4-Dinitrophenol 2 mM |
---|---|---|---|---|---|
remove | |||||
2,267,793 | - | +0.1 | |||
2,267,806 | - | -0.1 | |||
2,267,817 | + | +0.8 | |||
2,267,819 | - | +0.1 | |||
2,267,853 | + | -0.2 | |||
2,268,026 | + | +0.9 | |||
2,268,026 | + | -1.2 | |||
2,268,056 | + | +0.5 | |||
2,268,058 | - | spr | b2175 | 0.10 | -0.9 |
2,268,072 | - | spr | b2175 | 0.13 | -0.9 |
2,268,142 | - | spr | b2175 | 0.25 | -0.5 |
2,268,216 | + | spr | b2175 | 0.38 | -0.2 |
2,268,216 | + | spr | b2175 | 0.38 | -1.4 |
2,268,216 | + | spr | b2175 | 0.38 | -1.2 |
2,268,306 | - | spr | b2175 | 0.54 | -0.9 |
2,268,416 | - | spr | b2175 | 0.73 | -0.6 |
2,268,468 | - | spr | b2175 | 0.82 | -2.5 |
2,268,516 | + | -2.3 | |||
2,268,516 | + | -1.2 | |||
2,268,536 | - | -0.1 | |||
2,268,574 | - | +0.3 | |||
2,268,574 | - | +0.9 | |||
2,268,579 | + | -0.2 | |||
2,268,594 | - | +0.3 | |||
2,268,660 | + | +0.9 | |||
2,268,660 | + | +0.0 | |||
2,268,684 | + | -0.7 | |||
2,268,694 | - | +0.4 | |||
2,268,694 | - | +0.2 | |||
2,268,813 | - | -0.1 | |||
2,268,813 | - | -0.2 | |||
2,268,895 | + | +0.9 | |||
2,268,895 | + | +0.8 | |||
2,268,933 | + | rtn | b2176 | 0.12 | +0.7 |
2,268,933 | + | rtn | b2176 | 0.12 | +0.3 |
2,268,971 | - | rtn | b2176 | 0.14 | +0.1 |
2,269,018 | - | rtn | b2176 | 0.17 | +1.1 |
2,269,083 | - | rtn | b2176 | 0.22 | -1.9 |
2,269,083 | - | rtn | b2176 | 0.22 | +0.2 |
2,269,086 | + | rtn | b2176 | 0.22 | -0.1 |
2,269,147 | + | rtn | b2176 | 0.26 | -0.1 |
2,269,147 | + | rtn | b2176 | 0.26 | +0.4 |
2,269,147 | + | rtn | b2176 | 0.26 | -0.3 |
2,269,155 | - | rtn | b2176 | 0.26 | -0.0 |
2,269,155 | - | rtn | b2176 | 0.26 | -0.1 |
2,269,338 | + | rtn | b2176 | 0.38 | +0.7 |
2,269,358 | + | rtn | b2176 | 0.39 | +0.2 |
2,269,358 | + | rtn | b2176 | 0.39 | +1.1 |
2,269,415 | - | rtn | b2176 | 0.43 | -0.3 |
2,269,425 | - | rtn | b2176 | 0.43 | -0.6 |
2,269,447 | - | rtn | b2176 | 0.45 | +0.5 |
2,269,447 | - | rtn | b2176 | 0.45 | +0.6 |
2,269,511 | - | rtn | b2176 | 0.49 | +0.5 |
2,269,511 | - | rtn | b2176 | 0.49 | +0.4 |
2,269,516 | - | rtn | b2176 | 0.49 | -1.8 |
2,269,630 | - | rtn | b2176 | 0.57 | +0.4 |
2,269,727 | + | rtn | b2176 | 0.63 | -0.0 |
2,269,739 | + | rtn | b2176 | 0.64 | +0.2 |
2,269,753 | - | rtn | b2176 | 0.65 | -0.2 |
2,269,998 | + | rtn | b2176 | 0.80 | +0.4 |
2,270,030 | - | rtn | b2176 | 0.82 | -0.1 |
2,270,185 | - | +0.4 | |||
2,270,329 | - | -0.6 | |||
2,270,363 | + | +0.4 | |||
2,270,421 | + | -0.2 | |||
2,270,421 | + | +0.8 | |||
2,270,429 | - | -1.1 | |||
2,270,439 | + | -0.9 | |||
2,270,440 | + | -1.3 | |||
2,270,440 | + | -1.8 | |||
2,270,591 | + | yejA | b2177 | 0.11 | -0.1 |
2,270,639 | - | yejA | b2177 | 0.14 | -0.7 |
2,270,639 | - | yejA | b2177 | 0.14 | -0.2 |
2,270,845 | + | yejA | b2177 | 0.25 | -0.8 |
2,270,852 | - | yejA | b2177 | 0.26 | -1.1 |
2,271,011 | + | yejA | b2177 | 0.34 | +0.2 |
2,271,016 | + | yejA | b2177 | 0.35 | -0.1 |
2,271,058 | + | yejA | b2177 | 0.37 | -0.8 |
2,271,058 | + | yejA | b2177 | 0.37 | +0.6 |
2,271,085 | + | yejA | b2177 | 0.39 | -0.5 |
2,271,085 | + | yejA | b2177 | 0.39 | -0.9 |
2,271,210 | - | yejA | b2177 | 0.45 | -0.6 |
2,271,210 | - | yejA | b2177 | 0.45 | -0.2 |
2,271,239 | - | yejA | b2177 | 0.47 | -0.4 |
2,271,239 | - | yejA | b2177 | 0.47 | -0.0 |
2,271,239 | - | yejA | b2177 | 0.47 | -0.4 |
2,271,239 | - | yejA | b2177 | 0.47 | +0.4 |
2,271,240 | - | yejA | b2177 | 0.47 | -0.6 |
2,271,295 | + | yejA | b2177 | 0.50 | -0.5 |
2,271,300 | + | yejA | b2177 | 0.50 | -0.4 |
Or see this region's nucleotide sequence