Strain Fitness in Escherichia coli BW25113 around b1499

Experiment: 2,4-Dinitrophenol 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb1498 and ydeO are separated by 401 nucleotidesydeO and yneN are separated by 74 nucleotidesyneN and YdeP are separated by 247 nucleotides b1498: b1498 - putative sulfatase (VIMSS), at 1,578,866 to 1,580,548 b1498 b1499: ydeO - predicted DNA-binding transcriptional acfivator (NCBI), at 1,580,950 to 1,581,711 ydeO b1500: yneN - Two component system connector membrane protein, EvgSA to PhoQP (RefSeq), at 1,581,786 to 1,581,983 yneN b1501: YdeP - putative oxidoreductase, major subunit, acid resistance protein (Katherine Huang), at 1,582,231 to 1,584,510 YdeP Position (kb) 1580 1581 1582Strain fitness (log2 ratio) -1 0 1at 1579.961 kb on + strand, within b1498at 1579.980 kb on - strand, within b1498at 1580.024 kb on - strand, within b1498at 1580.063 kb on + strand, within b1498at 1580.078 kb on - strand, within b1498at 1580.112 kb on - strand, within b1498at 1580.124 kb on - strand, within b1498at 1580.147 kb on - strand, within b1498at 1580.172 kb on - strand, within b1498at 1580.174 kb on + strand, within b1498at 1580.186 kb on + strand, within b1498at 1580.201 kb on - strand, within b1498at 1580.281 kb on - strand, within b1498at 1580.352 kb on + strand, within b1498at 1580.383 kb on + strandat 1580.454 kb on - strandat 1580.497 kb on + strandat 1580.525 kb on - strandat 1580.539 kb on - strandat 1580.549 kb on - strandat 1580.918 kb on - strandat 1580.924 kb on + strandat 1580.978 kb on + strandat 1581.015 kb on + strandat 1581.015 kb on + strandat 1581.085 kb on - strand, within ydeOat 1581.214 kb on - strand, within ydeOat 1582.355 kb on + strandat 1582.363 kb on - strandat 1582.363 kb on - strandat 1582.363 kb on - strandat 1582.370 kb on - strandat 1582.400 kb on - strandat 1582.400 kb on - strandat 1582.409 kb on - strandat 1582.463 kb on + strand, within YdePat 1582.512 kb on + strand, within YdePat 1582.515 kb on - strand, within YdePat 1582.527 kb on + strand, within YdePat 1582.530 kb on + strand, within YdePat 1582.538 kb on - strand, within YdePat 1582.538 kb on - strand, within YdePat 1582.564 kb on + strand, within YdePat 1582.575 kb on - strand, within YdeP

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Per-strain Table

Position Strand Gene LocusTag Fraction 2,4-Dinitrophenol 2 mM
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1,579,961 + b1498 b1498 0.65 +0.3
1,579,980 - b1498 b1498 0.66 +0.0
1,580,024 - b1498 b1498 0.69 -0.2
1,580,063 + b1498 b1498 0.71 -0.5
1,580,078 - b1498 b1498 0.72 -0.4
1,580,112 - b1498 b1498 0.74 +0.1
1,580,124 - b1498 b1498 0.75 +0.7
1,580,147 - b1498 b1498 0.76 -0.4
1,580,172 - b1498 b1498 0.78 -0.8
1,580,174 + b1498 b1498 0.78 -0.4
1,580,186 + b1498 b1498 0.78 +0.0
1,580,201 - b1498 b1498 0.79 +0.3
1,580,281 - b1498 b1498 0.84 -0.7
1,580,352 + b1498 b1498 0.88 +0.5
1,580,383 + +0.5
1,580,454 - +0.9
1,580,497 + -0.3
1,580,525 - -0.1
1,580,539 - -0.4
1,580,549 - -0.0
1,580,918 - +0.3
1,580,924 + +0.1
1,580,978 + +0.2
1,581,015 + -0.3
1,581,015 + +0.2
1,581,085 - ydeO b1499 0.18 +0.1
1,581,214 - ydeO b1499 0.35 -0.4
1,582,355 + +0.1
1,582,363 - -0.4
1,582,363 - -1.5
1,582,363 - +0.1
1,582,370 - +1.6
1,582,400 - -0.4
1,582,400 - -0.7
1,582,409 - -0.9
1,582,463 + YdeP b1501 0.10 +0.1
1,582,512 + YdeP b1501 0.12 +0.2
1,582,515 - YdeP b1501 0.12 +0.2
1,582,527 + YdeP b1501 0.13 +0.5
1,582,530 + YdeP b1501 0.13 +0.1
1,582,538 - YdeP b1501 0.13 +0.4
1,582,538 - YdeP b1501 0.13 -1.4
1,582,564 + YdeP b1501 0.15 -0.8
1,582,575 - YdeP b1501 0.15 -0.3

Or see this region's nucleotide sequence