Strain Fitness in Escherichia coli BW25113 around b0979
Experiment: 2,4-Dinitrophenol 2 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2,4-Dinitrophenol 2 mM |
---|---|---|---|---|---|
remove | |||||
1,037,766 | + | appC | b0978 | 0.52 | +1.0 |
1,037,904 | - | appC | b0978 | 0.61 | -0.1 |
1,037,904 | - | appC | b0978 | 0.61 | +0.2 |
1,037,934 | - | appC | b0978 | 0.63 | +0.1 |
1,037,988 | - | appC | b0978 | 0.66 | -0.4 |
1,037,988 | - | appC | b0978 | 0.66 | +0.9 |
1,038,009 | - | appC | b0978 | 0.68 | -0.1 |
1,038,093 | - | appC | b0978 | 0.73 | -0.6 |
1,038,110 | - | appC | b0978 | 0.74 | +0.2 |
1,038,170 | - | appC | b0978 | 0.78 | -0.8 |
1,038,224 | - | appC | b0978 | 0.82 | +0.5 |
1,038,248 | - | appC | b0978 | 0.83 | -0.1 |
1,038,293 | - | appC | b0978 | 0.86 | -0.0 |
1,038,293 | - | appC | b0978 | 0.86 | +0.7 |
1,038,327 | - | appC | b0978 | 0.88 | -0.0 |
1,038,336 | + | appC | b0978 | 0.89 | -1.5 |
1,038,377 | + | -0.7 | |||
1,038,395 | - | -0.1 | |||
1,038,805 | - | appB | b0979 | 0.25 | -0.1 |
1,039,201 | + | appB | b0979 | 0.60 | -0.8 |
1,039,201 | + | appB | b0979 | 0.60 | -0.4 |
1,039,201 | + | appB | b0979 | 0.60 | +0.5 |
1,039,209 | - | appB | b0979 | 0.61 | -0.7 |
1,039,209 | - | appB | b0979 | 0.61 | +1.3 |
1,039,263 | + | appB | b0979 | 0.65 | +0.9 |
1,039,453 | - | appB | b0979 | 0.82 | +0.2 |
1,039,453 | - | appB | b0979 | 0.82 | -1.8 |
1,039,528 | + | appB | b0979 | 0.89 | -0.3 |
1,039,566 | + | -0.8 | |||
1,039,581 | + | +0.1 | |||
1,039,617 | + | -0.5 | |||
1,039,728 | - | yccB | b4592 | 0.65 | -0.1 |
1,039,730 | + | yccB | b4592 | 0.67 | +0.2 |
1,039,730 | + | yccB | b4592 | 0.67 | +0.7 |
1,039,764 | + | -0.4 | |||
1,039,829 | + | -0.4 | |||
1,039,878 | - | +0.2 | |||
1,039,903 | + | +1.0 | |||
1,039,903 | + | -0.4 | |||
1,039,916 | - | +0.7 | |||
1,039,950 | + | +1.3 | |||
1,039,950 | + | +0.5 | |||
1,039,950 | + | -0.4 | |||
1,039,960 | - | +0.4 | |||
1,040,065 | - | appA | b0980 | 0.17 | +0.2 |
1,040,184 | - | appA | b0980 | 0.26 | +0.3 |
1,040,226 | - | appA | b0980 | 0.30 | +0.1 |
1,040,254 | + | appA | b0980 | 0.32 | -0.1 |
1,040,348 | - | appA | b0980 | 0.39 | -0.6 |
Or see this region's nucleotide sequence