Experiment: 2,4-Dinitrophenol 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yagR and yagS overlap by 4 nucleotides yagS and yagT overlap by 4 nucleotides
b0284: yagR - predicted oxidoreductase with molybdenum-binding domain (NCBI), at 297,960 to 300,158
yagR
b0285: yagS - predicted oxidoreductase with FAD-binding domain (NCBI), at 300,155 to 301,111
yagS
b0286: yagT - predicted xanthine dehydrogenase, 2Fe-2S subunit (NCBI), at 301,108 to 301,797
yagT
Position (kb) 300
301
302 Strain fitness (log2 ratio) -2
-1
0
1 at 299.169 kb on + strand, within yagR at 299.206 kb on - strand, within yagR at 299.206 kb on - strand, within yagR at 299.218 kb on + strand, within yagR at 299.218 kb on + strand, within yagR at 299.341 kb on - strand, within yagR at 299.341 kb on - strand, within yagR at 299.413 kb on + strand, within yagR at 299.543 kb on + strand, within yagR at 299.952 kb on + strand at 299.952 kb on + strand at 300.038 kb on + strand at 300.109 kb on + strand at 300.109 kb on + strand at 300.176 kb on + strand at 300.181 kb on + strand at 300.181 kb on + strand at 300.196 kb on - strand at 300.268 kb on - strand, within yagS at 300.268 kb on - strand, within yagS at 300.325 kb on + strand, within yagS at 300.385 kb on + strand, within yagS at 300.483 kb on + strand, within yagS at 300.486 kb on - strand, within yagS at 300.486 kb on - strand, within yagS at 300.544 kb on + strand, within yagS at 300.552 kb on - strand, within yagS at 300.581 kb on + strand, within yagS at 300.719 kb on + strand, within yagS at 300.798 kb on + strand, within yagS at 300.829 kb on - strand, within yagS at 300.887 kb on - strand, within yagS at 300.916 kb on - strand, within yagS at 301.099 kb on - strand at 301.177 kb on + strand, within yagT at 301.287 kb on + strand, within yagT at 301.300 kb on + strand, within yagT at 301.300 kb on + strand, within yagT at 301.344 kb on - strand, within yagT at 301.428 kb on - strand, within yagT at 301.483 kb on - strand, within yagT at 301.483 kb on - strand, within yagT at 301.489 kb on - strand, within yagT at 301.580 kb on - strand, within yagT at 301.580 kb on - strand, within yagT at 301.638 kb on - strand, within yagT at 301.638 kb on - strand, within yagT at 301.672 kb on - strand, within yagT at 301.790 kb on - strand at 301.795 kb on + strand at 301.795 kb on + strand at 301.797 kb on + strand at 301.797 kb on + strand at 301.797 kb on + strand at 301.800 kb on - strand at 301.833 kb on - strand at 301.857 kb on - strand at 301.955 kb on + strand at 301.963 kb on - strand at 301.986 kb on + strand at 301.996 kb on - strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.030 kb on + strand at 302.031 kb on + strand at 302.033 kb on + strand at 302.033 kb on + strand at 302.033 kb on + strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.038 kb on - strand at 302.040 kb on + strand at 302.048 kb on - strand at 302.048 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2,4-Dinitrophenol 2 mM remove 299,169 + yagR b0284 0.55 +0.1 299,206 - yagR b0284 0.57 +0.0 299,206 - yagR b0284 0.57 +0.6 299,218 + yagR b0284 0.57 +0.1 299,218 + yagR b0284 0.57 +0.6 299,341 - yagR b0284 0.63 -0.5 299,341 - yagR b0284 0.63 +0.1 299,413 + yagR b0284 0.66 -0.9 299,543 + yagR b0284 0.72 +0.9 299,952 + -0.4 299,952 + +0.4 300,038 + +0.1 300,109 + -0.8 300,109 + +0.6 300,176 + -0.5 300,181 + +0.1 300,181 + -0.3 300,196 - +0.3 300,268 - yagS b0285 0.12 +0.2 300,268 - yagS b0285 0.12 +0.3 300,325 + yagS b0285 0.18 -0.8 300,385 + yagS b0285 0.24 +1.1 300,483 + yagS b0285 0.34 -0.2 300,486 - yagS b0285 0.35 -0.5 300,486 - yagS b0285 0.35 -0.5 300,544 + yagS b0285 0.41 -0.9 300,552 - yagS b0285 0.41 +0.1 300,581 + yagS b0285 0.45 +0.3 300,719 + yagS b0285 0.59 +0.5 300,798 + yagS b0285 0.67 +0.5 300,829 - yagS b0285 0.70 +0.1 300,887 - yagS b0285 0.76 +0.5 300,916 - yagS b0285 0.80 +0.1 301,099 - -1.0 301,177 + yagT b0286 0.10 +0.4 301,287 + yagT b0286 0.26 +0.3 301,300 + yagT b0286 0.28 +0.2 301,300 + yagT b0286 0.28 +0.4 301,344 - yagT b0286 0.34 -0.0 301,428 - yagT b0286 0.46 -1.2 301,483 - yagT b0286 0.54 -2.2 301,483 - yagT b0286 0.54 +0.3 301,489 - yagT b0286 0.55 -0.7 301,580 - yagT b0286 0.68 -0.0 301,580 - yagT b0286 0.68 +0.4 301,638 - yagT b0286 0.77 -0.9 301,638 - yagT b0286 0.77 -0.2 301,672 - yagT b0286 0.82 +0.3 301,790 - -0.0 301,795 + -0.3 301,795 + +0.7 301,797 + +1.2 301,797 + +0.5 301,797 + +0.2 301,800 - -0.2 301,833 - -0.2 301,857 - -0.5 301,955 + +0.0 301,963 - +0.4 301,986 + -0.1 301,996 - -0.2 302,030 + +0.1 302,030 + +0.5 302,030 + +0.3 302,030 + +0.4 302,030 + -0.1 302,030 + +1.0 302,030 + +0.0 302,030 + +0.5 302,030 + -0.3 302,030 + +0.4 302,030 + +0.0 302,031 + -0.1 302,033 + -0.2 302,033 + -1.4 302,033 + +0.3 302,038 - -0.0 302,038 - +0.3 302,038 - -0.1 302,038 - -0.1 302,038 - +1.3 302,038 - -0.2 302,038 - -0.5 302,038 - -0.2 302,038 - -0.0 302,040 + -1.5 302,048 - +0.4 302,048 - -0.6
Or see this region's nucleotide sequence