Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4824

Experiment: LB_plus_SM_buffer with 6F2_phage 0.01875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4822 and GFF4823 are separated by 87 nucleotidesGFF4823 and GFF4824 overlap by 2 nucleotidesGFF4824 and GFF4825 are separated by 326 nucleotides GFF4822 - Queuosine biosynthesis QueD, PTPS-I, at 123,002 to 123,262 GFF4822 GFF4823 - STY3078 protein, at 123,350 to 124,147 GFF4823 GFF4824 - FIG01046827: hypothetical protein, at 124,146 to 124,400 GFF4824 GFF4825 - hypothetical protein, at 124,727 to 124,963 GFF4825 Position (kb) 124 125Strain fitness (log2 ratio) -1 0 1at 123.575 kb on - strand, within GFF4823at 123.634 kb on - strand, within GFF4823at 123.793 kb on - strand, within GFF4823at 123.934 kb on - strand, within GFF4823at 124.037 kb on - strand, within GFF4823at 124.037 kb on - strand, within GFF4823at 124.128 kb on - strandat 124.208 kb on + strand, within GFF4824at 124.239 kb on + strand, within GFF4824at 124.251 kb on - strand, within GFF4824at 124.312 kb on - strand, within GFF4824at 124.397 kb on - strandat 124.399 kb on - strandat 124.399 kb on - strandat 124.402 kb on - strandat 124.601 kb on + strandat 124.701 kb on + strandat 124.962 kb on - strandat 125.007 kb on + strandat 125.088 kb on - strandat 125.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.01875 MOI
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123,575 - GFF4823 0.28 +0.4
123,634 - GFF4823 0.36 -0.0
123,793 - GFF4823 0.56 -0.1
123,934 - GFF4823 0.73 +0.2
124,037 - GFF4823 0.86 +0.2
124,037 - GFF4823 0.86 +0.0
124,128 - -1.7
124,208 + GFF4824 0.24 +0.1
124,239 + GFF4824 0.36 +0.2
124,251 - GFF4824 0.41 +0.4
124,312 - GFF4824 0.65 -0.0
124,397 - +0.5
124,399 - -0.1
124,399 - -0.2
124,402 - -0.3
124,601 + -0.3
124,701 + +0.5
124,962 - +0.0
125,007 + -0.8
125,088 - -1.4
125,088 - +0.2

Or see this region's nucleotide sequence