Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2370 and B158DRAFT_2371 are separated by 8 nucleotides B158DRAFT_2371 and B158DRAFT_2372 are separated by 329 nucleotides B158DRAFT_2372 and B158DRAFT_2373 are separated by 304 nucleotides B158DRAFT_2373 and B158DRAFT_2374 overlap by 31 nucleotides
B158DRAFT_2370: B158DRAFT_2370 - electron transport complex, RnfABCDGE type, B subunit, at 541,742 to 542,329
_2370
B158DRAFT_2371: B158DRAFT_2371 - electron transport complex, RnfABCDGE type, A subunit, at 542,338 to 542,919
_2371
B158DRAFT_2372: B158DRAFT_2372 - Transposase and inactivated derivatives, at 543,249 to 543,785
_2372
B158DRAFT_2373: B158DRAFT_2373 - Putative lipid carrier protein, at 544,090 to 544,662
_2373
B158DRAFT_2374: B158DRAFT_2374 - Collagenase and related proteases, at 544,632 to 545,513
_2374
Position (kb) 543
544 Strain fitness (log2 ratio) -2
-1
0
1 at 542.343 kb on - strand at 543.074 kb on - strand at 543.095 kb on + strand at 543.103 kb on - strand at 543.103 kb on - strand at 543.134 kb on + strand at 543.144 kb on + strand at 543.152 kb on - strand at 543.166 kb on + strand at 543.169 kb on - strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.171 kb on + strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.179 kb on - strand at 543.265 kb on + strand at 543.265 kb on + strand at 543.266 kb on + strand at 543.266 kb on + strand at 543.266 kb on + strand at 543.266 kb on + strand at 543.266 kb on + strand at 543.274 kb on - strand at 543.274 kb on - strand at 543.274 kb on - strand at 543.274 kb on - strand at 543.274 kb on - strand at 543.274 kb on - strand at 543.321 kb on + strand, within B158DRAFT_2372 at 543.413 kb on + strand, within B158DRAFT_2372 at 543.421 kb on - strand, within B158DRAFT_2372 at 543.501 kb on - strand, within B158DRAFT_2372 at 543.501 kb on - strand, within B158DRAFT_2372 at 543.503 kb on + strand, within B158DRAFT_2372 at 543.503 kb on + strand, within B158DRAFT_2372 at 543.503 kb on + strand, within B158DRAFT_2372 at 543.503 kb on + strand, within B158DRAFT_2372 at 543.506 kb on - strand, within B158DRAFT_2372 at 543.506 kb on - strand, within B158DRAFT_2372 at 543.510 kb on + strand, within B158DRAFT_2372 at 543.511 kb on - strand, within B158DRAFT_2372 at 543.536 kb on + strand, within B158DRAFT_2372 at 543.536 kb on + strand, within B158DRAFT_2372 at 543.644 kb on + strand, within B158DRAFT_2372 at 543.644 kb on + strand, within B158DRAFT_2372 at 543.652 kb on - strand, within B158DRAFT_2372 at 543.659 kb on - strand, within B158DRAFT_2372 at 543.662 kb on - strand, within B158DRAFT_2372 at 543.665 kb on + strand, within B158DRAFT_2372 at 543.665 kb on + strand, within B158DRAFT_2372 at 543.673 kb on - strand, within B158DRAFT_2372 at 543.723 kb on + strand, within B158DRAFT_2372 at 543.730 kb on + strand, within B158DRAFT_2372 at 543.736 kb on - strand at 543.745 kb on - strand at 543.747 kb on + strand at 543.755 kb on - strand at 543.895 kb on - strand at 543.976 kb on - strand at 544.027 kb on - strand at 544.052 kb on + strand at 544.105 kb on - strand at 544.122 kb on - strand at 544.177 kb on - strand, within B158DRAFT_2373 at 544.203 kb on - strand, within B158DRAFT_2373 at 544.216 kb on - strand, within B158DRAFT_2373 at 544.261 kb on - strand, within B158DRAFT_2373 at 544.261 kb on - strand, within B158DRAFT_2373 at 544.273 kb on + strand, within B158DRAFT_2373 at 544.273 kb on + strand, within B158DRAFT_2373 at 544.273 kb on + strand, within B158DRAFT_2373 at 544.273 kb on + strand, within B158DRAFT_2373 at 544.273 kb on + strand, within B158DRAFT_2373 at 544.273 kb on + strand, within B158DRAFT_2373 at 544.281 kb on - strand, within B158DRAFT_2373 at 544.281 kb on - strand, within B158DRAFT_2373 at 544.281 kb on - strand, within B158DRAFT_2373 at 544.281 kb on - strand, within B158DRAFT_2373 at 544.281 kb on - strand, within B158DRAFT_2373 at 544.281 kb on - strand, within B158DRAFT_2373 at 544.281 kb on - strand, within B158DRAFT_2373 at 544.281 kb on - strand, within B158DRAFT_2373 at 544.281 kb on - strand, within B158DRAFT_2373 at 544.336 kb on + strand, within B158DRAFT_2373 at 544.355 kb on + strand, within B158DRAFT_2373 at 544.530 kb on - strand, within B158DRAFT_2373 at 544.658 kb on + strand at 544.665 kb on + strand at 544.690 kb on - strand at 544.704 kb on + strand at 544.731 kb on + strand, within B158DRAFT_2374 at 544.731 kb on + strand, within B158DRAFT_2374 at 544.744 kb on - strand, within B158DRAFT_2374
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 542,343 - -2.5 543,074 - +0.2 543,095 + -1.0 543,103 - +0.0 543,103 - -0.2 543,134 + -0.3 543,144 + -0.0 543,152 - -0.2 543,166 + +0.4 543,169 - -0.1 543,171 + -1.7 543,171 + +0.1 543,171 + -1.2 543,171 + -0.2 543,171 + +0.2 543,171 + -0.6 543,171 + -0.5 543,171 + -0.5 543,171 + -0.1 543,171 + +0.0 543,171 + -1.1 543,171 + +0.0 543,171 + -0.1 543,171 + -0.0 543,171 + -0.1 543,171 + -0.5 543,171 + +0.7 543,171 + -0.3 543,171 + -0.2 543,171 + +0.2 543,171 + +0.2 543,171 + +0.0 543,171 + -0.0 543,171 + +0.2 543,171 + +0.6 543,171 + +0.3 543,171 + +0.3 543,179 - -0.5 543,179 - +0.7 543,179 - -0.2 543,179 - +0.3 543,179 - +0.0 543,179 - -0.1 543,179 - -0.3 543,179 - +0.2 543,179 - -0.1 543,179 - +0.1 543,179 - +0.0 543,179 - +0.7 543,179 - +0.6 543,179 - +0.3 543,179 - -0.2 543,179 - -0.2 543,179 - -2.4 543,179 - +0.1 543,179 - -0.2 543,179 - -0.4 543,179 - +0.3 543,179 - -0.1 543,179 - -0.4 543,265 + -0.2 543,265 + +0.5 543,266 + +0.3 543,266 + -0.0 543,266 + -0.1 543,266 + -0.2 543,266 + -0.1 543,274 - +0.1 543,274 - -0.0 543,274 - +0.2 543,274 - +0.2 543,274 - -0.5 543,274 - -0.6 543,321 + B158DRAFT_2372 0.13 +0.0 543,413 + B158DRAFT_2372 0.31 +0.1 543,421 - B158DRAFT_2372 0.32 -0.6 543,501 - B158DRAFT_2372 0.47 +0.1 543,501 - B158DRAFT_2372 0.47 -1.0 543,503 + B158DRAFT_2372 0.47 -1.0 543,503 + B158DRAFT_2372 0.47 -1.7 543,503 + B158DRAFT_2372 0.47 -1.3 543,503 + B158DRAFT_2372 0.47 -0.4 543,506 - B158DRAFT_2372 0.48 +0.3 543,506 - B158DRAFT_2372 0.48 -0.6 543,510 + B158DRAFT_2372 0.49 -0.3 543,511 - B158DRAFT_2372 0.49 -0.0 543,536 + B158DRAFT_2372 0.53 +0.4 543,536 + B158DRAFT_2372 0.53 +0.3 543,644 + B158DRAFT_2372 0.74 -0.5 543,644 + B158DRAFT_2372 0.74 -1.0 543,652 - B158DRAFT_2372 0.75 -0.2 543,659 - B158DRAFT_2372 0.76 -0.6 543,662 - B158DRAFT_2372 0.77 -0.2 543,665 + B158DRAFT_2372 0.77 -1.6 543,665 + B158DRAFT_2372 0.77 +0.2 543,673 - B158DRAFT_2372 0.79 -0.4 543,723 + B158DRAFT_2372 0.88 +0.0 543,730 + B158DRAFT_2372 0.90 -1.8 543,736 - -0.2 543,745 - +0.0 543,747 + -0.5 543,755 - +0.2 543,895 - -0.0 543,976 - -0.6 544,027 - -0.8 544,052 + +1.0 544,105 - +0.1 544,122 - -0.5 544,177 - B158DRAFT_2373 0.15 -1.1 544,203 - B158DRAFT_2373 0.20 +0.2 544,216 - B158DRAFT_2373 0.22 -0.1 544,261 - B158DRAFT_2373 0.30 +0.1 544,261 - B158DRAFT_2373 0.30 -0.3 544,273 + B158DRAFT_2373 0.32 -0.6 544,273 + B158DRAFT_2373 0.32 +0.0 544,273 + B158DRAFT_2373 0.32 +0.4 544,273 + B158DRAFT_2373 0.32 -0.7 544,273 + B158DRAFT_2373 0.32 +0.3 544,273 + B158DRAFT_2373 0.32 -0.5 544,281 - B158DRAFT_2373 0.33 -0.1 544,281 - B158DRAFT_2373 0.33 -0.8 544,281 - B158DRAFT_2373 0.33 +0.8 544,281 - B158DRAFT_2373 0.33 +0.4 544,281 - B158DRAFT_2373 0.33 -0.1 544,281 - B158DRAFT_2373 0.33 -0.2 544,281 - B158DRAFT_2373 0.33 -1.1 544,281 - B158DRAFT_2373 0.33 -0.7 544,281 - B158DRAFT_2373 0.33 -0.3 544,336 + B158DRAFT_2373 0.43 -0.6 544,355 + B158DRAFT_2373 0.46 +0.2 544,530 - B158DRAFT_2373 0.77 -0.1 544,658 + -1.1 544,665 + -0.7 544,690 - -0.1 544,704 + +0.1 544,731 + B158DRAFT_2374 0.11 -0.7 544,731 + B158DRAFT_2374 0.11 +0.6 544,744 - B158DRAFT_2374 0.13 -0.1
Or see this region's nucleotide sequence