Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1850

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1848 and B158DRAFT_1849 are separated by 130 nucleotidesB158DRAFT_1849 and B158DRAFT_1850 are separated by 630 nucleotidesB158DRAFT_1850 and B158DRAFT_1851 are separated by 200 nucleotidesB158DRAFT_1851 and B158DRAFT_1852 overlap by 62 nucleotidesB158DRAFT_1852 and B158DRAFT_1853 are separated by 60 nucleotides B158DRAFT_1848: B158DRAFT_1848 - 23S rRNA. Bacterial LSU, at 1 to 86 _1848 B158DRAFT_1849: B158DRAFT_1849 - 5S rRNA. Bacterial TSU, at 217 to 332 _1849 B158DRAFT_1850: B158DRAFT_1850 - ATP-dependent RNA helicase CsdA (EC 5.99.1.-), at 963 to 2,756 _1850 B158DRAFT_1851: B158DRAFT_1851 - hypothetical protein, at 2,957 to 3,082 _1851 B158DRAFT_1852: B158DRAFT_1852 - hypothetical protein, at 3,021 to 3,512 _1852 B158DRAFT_1853: B158DRAFT_1853 - Imidazolonepropionase and related amidohydrolases, at 3,573 to 4,871 _1853 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.356 kb on + strandat 0.356 kb on + strandat 0.411 kb on + strandat 0.416 kb on + strandat 0.419 kb on - strandat 0.421 kb on + strandat 0.421 kb on + strandat 0.424 kb on - strandat 0.424 kb on - strandat 0.429 kb on - strandat 0.429 kb on - strandat 0.437 kb on - strandat 0.442 kb on + strandat 0.442 kb on + strandat 0.455 kb on + strandat 0.510 kb on - strandat 0.522 kb on + strandat 0.542 kb on + strandat 0.549 kb on + strandat 0.629 kb on + strandat 0.681 kb on - strandat 0.683 kb on + strandat 0.723 kb on + strandat 0.798 kb on - strandat 0.923 kb on - strandat 0.951 kb on - strandat 1.005 kb on + strandat 1.078 kb on - strandat 1.078 kb on - strandat 1.097 kb on + strandat 1.103 kb on - strandat 1.156 kb on + strand, within B158DRAFT_1850at 1.156 kb on + strand, within B158DRAFT_1850at 1.200 kb on + strand, within B158DRAFT_1850at 1.200 kb on + strand, within B158DRAFT_1850at 1.208 kb on - strand, within B158DRAFT_1850at 1.324 kb on - strand, within B158DRAFT_1850at 1.324 kb on - strand, within B158DRAFT_1850at 1.361 kb on - strand, within B158DRAFT_1850at 1.451 kb on + strand, within B158DRAFT_1850at 1.615 kb on - strand, within B158DRAFT_1850at 1.617 kb on - strand, within B158DRAFT_1850at 1.748 kb on + strand, within B158DRAFT_1850at 1.820 kb on + strand, within B158DRAFT_1850at 2.087 kb on + strand, within B158DRAFT_1850at 2.087 kb on + strand, within B158DRAFT_1850at 2.087 kb on + strand, within B158DRAFT_1850at 2.087 kb on + strand, within B158DRAFT_1850at 2.095 kb on - strand, within B158DRAFT_1850at 2.132 kb on + strand, within B158DRAFT_1850at 2.331 kb on + strand, within B158DRAFT_1850at 2.403 kb on + strand, within B158DRAFT_1850at 2.411 kb on - strand, within B158DRAFT_1850at 2.412 kb on - strand, within B158DRAFT_1850at 2.508 kb on + strand, within B158DRAFT_1850at 2.516 kb on - strand, within B158DRAFT_1850at 2.598 kb on - strandat 2.722 kb on - strandat 2.723 kb on - strandat 2.767 kb on - strandat 2.868 kb on + strandat 2.868 kb on + strandat 2.868 kb on + strandat 2.873 kb on + strandat 2.876 kb on - strandat 2.923 kb on + strandat 2.929 kb on - strandat 2.980 kb on + strand, within B158DRAFT_1851at 3.006 kb on + strand, within B158DRAFT_1851at 3.014 kb on - strand, within B158DRAFT_1851at 3.014 kb on - strand, within B158DRAFT_1851at 3.039 kb on + strandat 3.187 kb on + strand, within B158DRAFT_1852at 3.297 kb on + strand, within B158DRAFT_1852at 3.398 kb on + strand, within B158DRAFT_1852at 3.633 kb on - strandat 3.667 kb on - strandat 3.681 kb on - strandat 3.716 kb on + strand, within B158DRAFT_1853at 3.716 kb on + strand, within B158DRAFT_1853at 3.716 kb on + strand, within B158DRAFT_1853at 3.716 kb on + strand, within B158DRAFT_1853at 3.724 kb on - strand, within B158DRAFT_1853at 3.724 kb on - strand, within B158DRAFT_1853at 3.726 kb on + strand, within B158DRAFT_1853at 3.726 kb on + strand, within B158DRAFT_1853at 3.726 kb on + strand, within B158DRAFT_1853at 3.734 kb on - strand, within B158DRAFT_1853at 3.734 kb on - strand, within B158DRAFT_1853at 3.734 kb on - strand, within B158DRAFT_1853at 3.734 kb on - strand, within B158DRAFT_1853at 3.734 kb on - strand, within B158DRAFT_1853

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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356 + -1.4
356 + -1.2
411 + -0.0
416 + -0.2
419 - +0.3
421 + +0.3
421 + +0.2
424 - -0.2
424 - +0.2
429 - -0.0
429 - -2.1
437 - -0.3
442 + +0.1
442 + +0.1
455 + -0.3
510 - -1.2
522 + -0.5
542 + -0.7
549 + +0.0
629 + -1.1
681 - -1.1
683 + +0.7
723 + +0.5
798 - +0.5
923 - +0.2
951 - +0.1
1,005 + -0.5
1,078 - -0.1
1,078 - +0.3
1,097 + -1.4
1,103 - +0.6
1,156 + B158DRAFT_1850 0.11 -2.0
1,156 + B158DRAFT_1850 0.11 -0.0
1,200 + B158DRAFT_1850 0.13 -1.0
1,200 + B158DRAFT_1850 0.13 -1.1
1,208 - B158DRAFT_1850 0.14 -1.7
1,324 - B158DRAFT_1850 0.20 -0.6
1,324 - B158DRAFT_1850 0.20 -1.7
1,361 - B158DRAFT_1850 0.22 -0.7
1,451 + B158DRAFT_1850 0.27 +0.2
1,615 - B158DRAFT_1850 0.36 -1.4
1,617 - B158DRAFT_1850 0.36 -0.6
1,748 + B158DRAFT_1850 0.44 +0.7
1,820 + B158DRAFT_1850 0.48 +0.5
2,087 + B158DRAFT_1850 0.63 -0.9
2,087 + B158DRAFT_1850 0.63 -2.9
2,087 + B158DRAFT_1850 0.63 +1.0
2,087 + B158DRAFT_1850 0.63 -0.6
2,095 - B158DRAFT_1850 0.63 +0.4
2,132 + B158DRAFT_1850 0.65 -0.4
2,331 + B158DRAFT_1850 0.76 -1.4
2,403 + B158DRAFT_1850 0.80 -0.4
2,411 - B158DRAFT_1850 0.81 -1.8
2,412 - B158DRAFT_1850 0.81 -1.9
2,508 + B158DRAFT_1850 0.86 -0.7
2,516 - B158DRAFT_1850 0.87 -1.5
2,598 - -1.2
2,722 - -1.2
2,723 - -1.7
2,767 - +0.5
2,868 + -2.4
2,868 + -0.3
2,868 + -1.1
2,873 + -0.9
2,876 - -2.9
2,923 + +0.2
2,929 - -2.0
2,980 + B158DRAFT_1851 0.18 -0.1
3,006 + B158DRAFT_1851 0.39 +0.2
3,014 - B158DRAFT_1851 0.45 +0.1
3,014 - B158DRAFT_1851 0.45 -0.9
3,039 + -0.3
3,187 + B158DRAFT_1852 0.34 -0.7
3,297 + B158DRAFT_1852 0.56 +0.5
3,398 + B158DRAFT_1852 0.77 +0.1
3,633 - +0.4
3,667 - -0.5
3,681 - +0.1
3,716 + B158DRAFT_1853 0.11 +0.0
3,716 + B158DRAFT_1853 0.11 -0.5
3,716 + B158DRAFT_1853 0.11 +0.1
3,716 + B158DRAFT_1853 0.11 -0.2
3,724 - B158DRAFT_1853 0.12 +0.2
3,724 - B158DRAFT_1853 0.12 -0.5
3,726 + B158DRAFT_1853 0.12 -1.0
3,726 + B158DRAFT_1853 0.12 +0.3
3,726 + B158DRAFT_1853 0.12 -0.1
3,734 - B158DRAFT_1853 0.12 -0.1
3,734 - B158DRAFT_1853 0.12 +0.1
3,734 - B158DRAFT_1853 0.12 -0.0
3,734 - B158DRAFT_1853 0.12 -1.1
3,734 - B158DRAFT_1853 0.12 -0.0

Or see this region's nucleotide sequence