Strain Fitness in Agrobacterium fabrum C58 around Atu3841

Experiment: R2A with Vancomycin 0.009 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3840 and Atu3841 overlap by 2 nucleotidesAtu3841 and Atu3842 overlap by 20 nucleotidesAtu3842 and Atu3843 are separated by 342 nucleotides Atu3840: Atu3840 - hypothetical protein, at 935,740 to 936,048 Atu3840 Atu3841: Atu3841 - hypothetical protein, at 936,047 to 936,523 Atu3841 Atu3842: Atu3842 - hypothetical protein, at 936,504 to 937,094 Atu3842 Atu3843: Atu3843 - hypothetical protein, at 937,437 to 938,579 Atu3843 Position (kb) 936 937Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 935.146 kb on - strandat 935.189 kb on - strandat 935.228 kb on - strandat 935.251 kb on + strandat 935.251 kb on + strandat 935.251 kb on + strandat 935.251 kb on + strandat 935.251 kb on + strandat 935.251 kb on + strandat 935.251 kb on + strandat 935.259 kb on - strandat 935.259 kb on - strandat 935.259 kb on - strandat 935.283 kb on + strandat 935.290 kb on - strandat 935.290 kb on - strandat 935.298 kb on + strandat 935.298 kb on + strandat 935.306 kb on - strandat 935.316 kb on - strandat 935.369 kb on - strandat 935.502 kb on + strandat 935.512 kb on + strandat 935.520 kb on - strandat 935.526 kb on - strandat 935.526 kb on - strandat 935.561 kb on + strandat 935.577 kb on + strandat 935.593 kb on - strandat 935.603 kb on - strandat 935.611 kb on - strandat 935.670 kb on + strandat 935.745 kb on - strandat 935.798 kb on - strand, within Atu3840at 935.816 kb on - strand, within Atu3840at 935.816 kb on - strand, within Atu3840at 935.822 kb on + strand, within Atu3840at 935.828 kb on + strand, within Atu3840at 935.860 kb on + strand, within Atu3840at 935.860 kb on + strand, within Atu3840at 935.880 kb on + strand, within Atu3840at 935.880 kb on + strand, within Atu3840at 935.880 kb on + strand, within Atu3840at 935.880 kb on + strand, within Atu3840at 935.880 kb on + strand, within Atu3840at 935.888 kb on - strand, within Atu3840at 935.888 kb on - strand, within Atu3840at 935.979 kb on + strand, within Atu3840at 935.986 kb on + strand, within Atu3840at 935.994 kb on - strand, within Atu3840at 936.025 kb on + strandat 936.025 kb on + strandat 936.037 kb on + strandat 936.042 kb on + strandat 936.045 kb on - strandat 936.068 kb on - strandat 936.096 kb on - strand, within Atu3841at 936.148 kb on + strand, within Atu3841at 936.148 kb on + strand, within Atu3841at 936.165 kb on + strand, within Atu3841at 936.253 kb on - strand, within Atu3841at 936.308 kb on + strand, within Atu3841at 936.312 kb on - strand, within Atu3841at 936.312 kb on - strand, within Atu3841at 936.316 kb on + strand, within Atu3841at 936.318 kb on + strand, within Atu3841at 936.326 kb on - strand, within Atu3841at 936.326 kb on - strand, within Atu3841at 936.326 kb on - strand, within Atu3841at 936.338 kb on + strand, within Atu3841at 936.338 kb on + strand, within Atu3841at 936.346 kb on - strand, within Atu3841at 936.346 kb on - strand, within Atu3841at 936.419 kb on - strand, within Atu3841at 936.506 kb on + strandat 936.507 kb on + strandat 936.594 kb on - strand, within Atu3842at 936.594 kb on - strand, within Atu3842at 936.594 kb on - strand, within Atu3842at 936.623 kb on - strand, within Atu3842at 936.768 kb on + strand, within Atu3842at 936.790 kb on - strand, within Atu3842at 936.861 kb on + strand, within Atu3842at 936.864 kb on - strand, within Atu3842at 936.926 kb on - strand, within Atu3842at 936.988 kb on + strand, within Atu3842at 936.993 kb on + strand, within Atu3842at 937.001 kb on - strand, within Atu3842at 937.063 kb on + strandat 937.089 kb on - strandat 937.105 kb on + strandat 937.148 kb on - strandat 937.148 kb on - strandat 937.160 kb on + strandat 937.170 kb on + strandat 937.237 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.264 kb on - strandat 937.264 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM
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935,146 - -0.4
935,189 - -0.6
935,228 - -2.2
935,251 + -0.1
935,251 + +0.0
935,251 + +0.1
935,251 + +0.1
935,251 + +0.8
935,251 + +0.6
935,251 + +0.6
935,259 - -0.3
935,259 - +0.2
935,259 - +0.2
935,283 + -1.0
935,290 - -1.0
935,290 - +0.1
935,298 + -0.7
935,298 + +0.3
935,306 - -0.6
935,316 - +0.1
935,369 - -0.5
935,502 + -1.1
935,512 + -0.1
935,520 - +1.4
935,526 - -0.3
935,526 - -0.9
935,561 + +1.0
935,577 + -0.4
935,593 - +0.5
935,603 - +0.7
935,611 - +1.0
935,670 + +0.7
935,745 - +0.1
935,798 - Atu3840 0.19 +0.8
935,816 - Atu3840 0.25 +0.5
935,816 - Atu3840 0.25 +0.8
935,822 + Atu3840 0.27 -0.4
935,828 + Atu3840 0.28 -0.1
935,860 + Atu3840 0.39 -0.2
935,860 + Atu3840 0.39 +0.0
935,880 + Atu3840 0.45 -0.2
935,880 + Atu3840 0.45 +0.2
935,880 + Atu3840 0.45 +0.5
935,880 + Atu3840 0.45 -0.2
935,880 + Atu3840 0.45 -0.7
935,888 - Atu3840 0.48 +0.2
935,888 - Atu3840 0.48 -0.7
935,979 + Atu3840 0.77 -0.9
935,986 + Atu3840 0.80 -0.3
935,994 - Atu3840 0.82 -0.2
936,025 + +2.2
936,025 + -1.3
936,037 + -0.9
936,042 + +1.0
936,045 - +0.3
936,068 - +0.5
936,096 - Atu3841 0.10 -3.1
936,148 + Atu3841 0.21 -0.2
936,148 + Atu3841 0.21 -0.6
936,165 + Atu3841 0.25 -1.5
936,253 - Atu3841 0.43 -0.5
936,308 + Atu3841 0.55 +0.1
936,312 - Atu3841 0.56 -0.1
936,312 - Atu3841 0.56 -0.4
936,316 + Atu3841 0.56 +0.7
936,318 + Atu3841 0.57 +0.9
936,326 - Atu3841 0.58 -2.7
936,326 - Atu3841 0.58 -1.9
936,326 - Atu3841 0.58 -1.3
936,338 + Atu3841 0.61 -0.8
936,338 + Atu3841 0.61 -0.6
936,346 - Atu3841 0.63 -1.6
936,346 - Atu3841 0.63 +0.3
936,419 - Atu3841 0.78 +0.1
936,506 + +0.6
936,507 + -0.2
936,594 - Atu3842 0.15 +0.1
936,594 - Atu3842 0.15 -0.5
936,594 - Atu3842 0.15 +0.1
936,623 - Atu3842 0.20 -0.2
936,768 + Atu3842 0.45 -1.1
936,790 - Atu3842 0.48 -0.7
936,861 + Atu3842 0.60 -0.3
936,864 - Atu3842 0.61 -0.3
936,926 - Atu3842 0.71 +0.3
936,988 + Atu3842 0.82 -1.3
936,993 + Atu3842 0.83 -0.8
937,001 - Atu3842 0.84 +0.6
937,063 + -0.4
937,089 - -0.1
937,105 + +0.2
937,148 - -0.0
937,148 - -1.0
937,160 + -1.4
937,170 + -0.1
937,237 + -0.6
937,256 + +0.9
937,256 + +0.0
937,256 + -0.3
937,256 + -0.3
937,256 + +0.2
937,264 - +1.0
937,264 - -0.3

Or see this region's nucleotide sequence