Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3767 and Atu3768 are separated by 259 nucleotides Atu3768 and Atu3769 are separated by 149 nucleotides Atu3769 and Atu3770 are separated by 215 nucleotides
Atu3767: Atu3767 - diguanylate cyclase, at 849,135 to 850,043
Atu3767
Atu3768: Atu3768 - homospermidine synthase, at 850,303 to 851,748
Atu3768
Atu3769: Atu3769 - outer membrane lipoprotein, at 851,898 to 852,272
Atu3769
Atu3770: Atu3770 - 5'-nucleotidase, at 852,488 to 854,398
Atu3770
Position (kb) 850
851
852 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 849.675 kb on - strand, within Atu3767 at 849.675 kb on - strand, within Atu3767 at 849.733 kb on - strand, within Atu3767 at 849.750 kb on - strand, within Atu3767 at 849.815 kb on - strand, within Atu3767 at 849.857 kb on - strand, within Atu3767 at 849.992 kb on + strand at 849.995 kb on + strand at 850.090 kb on + strand at 850.197 kb on - strand at 850.197 kb on - strand at 850.197 kb on - strand at 850.197 kb on - strand at 850.375 kb on - strand at 850.385 kb on + strand at 850.491 kb on + strand, within Atu3768 at 850.501 kb on + strand, within Atu3768 at 850.509 kb on - strand, within Atu3768 at 850.520 kb on + strand, within Atu3768 at 850.526 kb on - strand, within Atu3768 at 850.542 kb on + strand, within Atu3768 at 850.542 kb on + strand, within Atu3768 at 850.550 kb on - strand, within Atu3768 at 850.552 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.565 kb on - strand, within Atu3768 at 850.565 kb on - strand, within Atu3768 at 850.571 kb on - strand, within Atu3768 at 850.745 kb on + strand, within Atu3768 at 850.782 kb on - strand, within Atu3768 at 850.804 kb on + strand, within Atu3768 at 850.812 kb on - strand, within Atu3768 at 850.830 kb on + strand, within Atu3768 at 850.838 kb on - strand, within Atu3768 at 850.895 kb on + strand, within Atu3768 at 850.903 kb on - strand, within Atu3768 at 850.920 kb on + strand, within Atu3768 at 850.920 kb on + strand, within Atu3768 at 850.944 kb on + strand, within Atu3768 at 850.976 kb on - strand, within Atu3768 at 851.003 kb on - strand, within Atu3768 at 851.059 kb on + strand, within Atu3768 at 851.128 kb on - strand, within Atu3768 at 851.228 kb on + strand, within Atu3768 at 851.236 kb on - strand, within Atu3768 at 851.300 kb on - strand, within Atu3768 at 851.354 kb on - strand, within Atu3768 at 851.368 kb on - strand, within Atu3768 at 851.415 kb on + strand, within Atu3768 at 851.462 kb on + strand, within Atu3768 at 851.527 kb on + strand, within Atu3768 at 851.527 kb on + strand, within Atu3768 at 851.535 kb on - strand, within Atu3768 at 851.549 kb on - strand, within Atu3768 at 851.553 kb on + strand, within Atu3768 at 851.559 kb on + strand, within Atu3768 at 851.584 kb on + strand, within Atu3768 at 851.622 kb on + strand at 851.622 kb on + strand at 851.646 kb on + strand at 851.654 kb on - strand at 851.654 kb on - strand at 851.673 kb on - strand at 851.678 kb on + strand at 851.686 kb on - strand at 851.709 kb on + strand at 851.717 kb on - strand at 851.770 kb on - strand at 851.880 kb on + strand at 852.248 kb on + strand at 852.322 kb on - strand at 852.391 kb on + strand at 852.470 kb on + strand at 852.475 kb on + strand at 852.483 kb on - strand at 852.519 kb on + strand at 852.576 kb on - strand at 852.675 kb on - strand at 852.718 kb on + strand, within Atu3770
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 849,675 - Atu3767 0.59 -0.5 849,675 - Atu3767 0.59 +0.1 849,733 - Atu3767 0.66 +0.1 849,750 - Atu3767 0.68 -0.1 849,815 - Atu3767 0.75 +0.5 849,857 - Atu3767 0.79 -1.7 849,992 + +0.0 849,995 + -2.1 850,090 + -1.3 850,197 - -1.1 850,197 - -1.5 850,197 - -0.1 850,197 - +0.9 850,375 - +0.9 850,385 + -0.7 850,491 + Atu3768 0.13 +0.9 850,501 + Atu3768 0.14 +1.2 850,509 - Atu3768 0.14 +0.2 850,520 + Atu3768 0.15 +1.3 850,526 - Atu3768 0.15 +1.6 850,542 + Atu3768 0.17 +0.4 850,542 + Atu3768 0.17 +1.1 850,550 - Atu3768 0.17 -0.4 850,552 + Atu3768 0.17 -0.9 850,557 + Atu3768 0.18 +2.0 850,557 + Atu3768 0.18 +1.3 850,557 + Atu3768 0.18 +0.1 850,557 + Atu3768 0.18 +1.7 850,565 - Atu3768 0.18 +1.9 850,565 - Atu3768 0.18 +1.3 850,571 - Atu3768 0.19 -0.1 850,745 + Atu3768 0.31 +1.8 850,782 - Atu3768 0.33 +0.9 850,804 + Atu3768 0.35 +0.3 850,812 - Atu3768 0.35 +0.1 850,830 + Atu3768 0.36 +0.8 850,838 - Atu3768 0.37 +0.3 850,895 + Atu3768 0.41 +1.1 850,903 - Atu3768 0.41 +1.1 850,920 + Atu3768 0.43 +0.5 850,920 + Atu3768 0.43 -0.8 850,944 + Atu3768 0.44 -0.1 850,976 - Atu3768 0.47 +1.6 851,003 - Atu3768 0.48 -0.6 851,059 + Atu3768 0.52 +0.6 851,128 - Atu3768 0.57 +0.5 851,228 + Atu3768 0.64 +0.7 851,236 - Atu3768 0.65 +0.3 851,300 - Atu3768 0.69 +0.8 851,354 - Atu3768 0.73 +1.8 851,368 - Atu3768 0.74 +0.9 851,415 + Atu3768 0.77 +0.7 851,462 + Atu3768 0.80 +1.0 851,527 + Atu3768 0.85 -0.6 851,527 + Atu3768 0.85 -1.0 851,535 - Atu3768 0.85 +0.7 851,549 - Atu3768 0.86 +0.8 851,553 + Atu3768 0.86 +0.7 851,559 + Atu3768 0.87 +1.2 851,584 + Atu3768 0.89 -0.4 851,622 + +1.0 851,622 + +0.8 851,646 + +1.0 851,654 - +0.6 851,654 - +0.4 851,673 - +0.3 851,678 + -0.1 851,686 - +0.3 851,709 + +0.4 851,717 - +1.3 851,770 - -0.1 851,880 + +6.0 852,248 + +6.3 852,322 - +0.6 852,391 + -0.8 852,470 + +0.5 852,475 + +0.1 852,483 - +0.7 852,519 + +0.8 852,576 - +0.5 852,675 - -1.6 852,718 + Atu3770 0.12 +0.2
Or see this region's nucleotide sequence