Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3362 and Atu3363 are separated by 78 nucleotides Atu3363 and Atu3364 are separated by 314 nucleotides
Atu3362: Atu3362 - monooxygenase, at 400,031 to 401,341
Atu3362
Atu3363: Atu3363 - sensory methylation accepting chemotaxis protein, at 401,420 to 403,156
Atu3363
Atu3364: Atu3364 - D-amino acid dehydrogenase, at 403,471 to 404,724
Atu3364
Position (kb) 401
402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 400.453 kb on + strand, within Atu3362 at 400.575 kb on - strand, within Atu3362 at 400.589 kb on + strand, within Atu3362 at 400.618 kb on - strand, within Atu3362 at 400.644 kb on - strand, within Atu3362 at 400.663 kb on - strand, within Atu3362 at 400.700 kb on + strand, within Atu3362 at 400.700 kb on + strand, within Atu3362 at 400.763 kb on + strand, within Atu3362 at 400.782 kb on + strand, within Atu3362 at 400.782 kb on - strand, within Atu3362 at 400.944 kb on - strand, within Atu3362 at 400.952 kb on + strand, within Atu3362 at 400.967 kb on - strand, within Atu3362 at 400.990 kb on + strand, within Atu3362 at 401.004 kb on + strand, within Atu3362 at 401.025 kb on + strand, within Atu3362 at 401.076 kb on + strand, within Atu3362 at 401.225 kb on - strand at 401.279 kb on + strand at 401.287 kb on + strand at 401.336 kb on + strand at 401.358 kb on + strand at 401.449 kb on - strand at 401.528 kb on - strand at 401.582 kb on - strand at 401.592 kb on - strand at 401.730 kb on + strand, within Atu3363 at 401.778 kb on - strand, within Atu3363 at 401.782 kb on + strand, within Atu3363 at 401.871 kb on - strand, within Atu3363 at 401.893 kb on - strand, within Atu3363 at 402.029 kb on - strand, within Atu3363 at 402.052 kb on + strand, within Atu3363 at 402.060 kb on + strand, within Atu3363 at 402.073 kb on - strand, within Atu3363 at 402.228 kb on - strand, within Atu3363 at 402.228 kb on - strand, within Atu3363 at 402.249 kb on - strand, within Atu3363 at 402.456 kb on - strand, within Atu3363 at 402.804 kb on + strand, within Atu3363 at 402.812 kb on - strand, within Atu3363 at 402.851 kb on - strand, within Atu3363 at 402.950 kb on - strand, within Atu3363 at 402.979 kb on + strand, within Atu3363 at 402.987 kb on - strand at 403.022 kb on + strand at 403.114 kb on + strand at 403.265 kb on - strand at 403.581 kb on + strand at 403.623 kb on - strand, within Atu3364 at 403.731 kb on + strand, within Atu3364 at 403.749 kb on + strand, within Atu3364 at 403.767 kb on + strand, within Atu3364 at 403.849 kb on + strand, within Atu3364 at 403.860 kb on + strand, within Atu3364 at 403.867 kb on - strand, within Atu3364 at 403.905 kb on + strand, within Atu3364 at 403.911 kb on - strand, within Atu3364 at 403.923 kb on + strand, within Atu3364 at 403.931 kb on - strand, within Atu3364 at 404.068 kb on - strand, within Atu3364 at 404.133 kb on + strand, within Atu3364 at 404.149 kb on - strand, within Atu3364
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 400,453 + Atu3362 0.32 +0.0 400,575 - Atu3362 0.41 -0.2 400,589 + Atu3362 0.43 +0.6 400,618 - Atu3362 0.45 -0.0 400,644 - Atu3362 0.47 -1.8 400,663 - Atu3362 0.48 -0.8 400,700 + Atu3362 0.51 +0.1 400,700 + Atu3362 0.51 +0.7 400,763 + Atu3362 0.56 +0.1 400,782 + Atu3362 0.57 +0.6 400,782 - Atu3362 0.57 +1.1 400,944 - Atu3362 0.70 +0.7 400,952 + Atu3362 0.70 -0.1 400,967 - Atu3362 0.71 -2.5 400,990 + Atu3362 0.73 +0.9 401,004 + Atu3362 0.74 +0.4 401,025 + Atu3362 0.76 -0.9 401,076 + Atu3362 0.80 -0.1 401,225 - +0.3 401,279 + -0.4 401,287 + -1.6 401,336 + -2.1 401,358 + +0.6 401,449 - -0.5 401,528 - +0.3 401,582 - +0.9 401,592 - -0.0 401,730 + Atu3363 0.18 -0.4 401,778 - Atu3363 0.21 -0.9 401,782 + Atu3363 0.21 +1.3 401,871 - Atu3363 0.26 +0.8 401,893 - Atu3363 0.27 -0.6 402,029 - Atu3363 0.35 +1.6 402,052 + Atu3363 0.36 -0.3 402,060 + Atu3363 0.37 +1.2 402,073 - Atu3363 0.38 -0.5 402,228 - Atu3363 0.47 -0.0 402,228 - Atu3363 0.47 +1.6 402,249 - Atu3363 0.48 -0.7 402,456 - Atu3363 0.60 -0.3 402,804 + Atu3363 0.80 +0.5 402,812 - Atu3363 0.80 -1.0 402,851 - Atu3363 0.82 -3.0 402,950 - Atu3363 0.88 +3.2 402,979 + Atu3363 0.90 +0.4 402,987 - -0.4 403,022 + -0.0 403,114 + -0.8 403,265 - -0.2 403,581 + -0.7 403,623 - Atu3364 0.12 +1.2 403,731 + Atu3364 0.21 +1.6 403,749 + Atu3364 0.22 -0.1 403,767 + Atu3364 0.24 +0.9 403,849 + Atu3364 0.30 +0.8 403,860 + Atu3364 0.31 -0.2 403,867 - Atu3364 0.32 -1.3 403,905 + Atu3364 0.35 -1.9 403,911 - Atu3364 0.35 -0.4 403,923 + Atu3364 0.36 -0.9 403,931 - Atu3364 0.37 -0.1 404,068 - Atu3364 0.48 -0.2 404,133 + Atu3364 0.53 -0.1 404,149 - Atu3364 0.54 -0.6
Or see this region's nucleotide sequence