Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3244 and Atu3245 are separated by 30 nucleotides Atu3245 and Atu3246 are separated by 71 nucleotides
Atu3244: Atu3244 - diguanylate cyclase, at 261,692 to 264,010
Atu3244
Atu3245: Atu3245 - amino acid ABC transporter substrate-binding protein, at 264,041 to 264,934
Atu3245
Atu3246: Atu3246 - amino acid ABC transporter substrate-binding protein, at 265,006 to 265,908
Atu3246
Position (kb) 264
265 Strain fitness (log2 ratio) -2
-1
0
1
2 at 263.062 kb on + strand, within Atu3244 at 263.068 kb on - strand, within Atu3244 at 263.113 kb on - strand, within Atu3244 at 263.113 kb on - strand, within Atu3244 at 263.129 kb on + strand, within Atu3244 at 263.159 kb on + strand, within Atu3244 at 263.159 kb on + strand, within Atu3244 at 263.187 kb on - strand, within Atu3244 at 263.239 kb on + strand, within Atu3244 at 263.239 kb on + strand, within Atu3244 at 263.326 kb on + strand, within Atu3244 at 263.404 kb on + strand, within Atu3244 at 263.412 kb on - strand, within Atu3244 at 263.412 kb on - strand, within Atu3244 at 263.427 kb on + strand, within Atu3244 at 263.435 kb on - strand, within Atu3244 at 263.463 kb on + strand, within Atu3244 at 263.471 kb on - strand, within Atu3244 at 263.586 kb on + strand, within Atu3244 at 263.641 kb on - strand, within Atu3244 at 263.703 kb on - strand, within Atu3244 at 263.703 kb on - strand, within Atu3244 at 263.755 kb on + strand, within Atu3244 at 263.790 kb on + strand at 263.790 kb on + strand at 263.790 kb on + strand at 263.798 kb on - strand at 263.798 kb on - strand at 263.902 kb on - strand at 263.956 kb on - strand at 264.084 kb on + strand at 264.235 kb on - strand, within Atu3245 at 264.265 kb on + strand, within Atu3245 at 264.288 kb on - strand, within Atu3245 at 264.301 kb on + strand, within Atu3245 at 264.303 kb on - strand, within Atu3245 at 264.368 kb on + strand, within Atu3245 at 264.532 kb on - strand, within Atu3245 at 264.553 kb on + strand, within Atu3245 at 264.564 kb on + strand, within Atu3245 at 264.661 kb on + strand, within Atu3245 at 264.678 kb on + strand, within Atu3245 at 264.687 kb on + strand, within Atu3245 at 264.699 kb on + strand, within Atu3245 at 264.766 kb on - strand, within Atu3245 at 264.777 kb on + strand, within Atu3245 at 264.781 kb on - strand, within Atu3245 at 264.794 kb on + strand, within Atu3245 at 264.802 kb on - strand, within Atu3245 at 264.802 kb on - strand, within Atu3245 at 264.885 kb on - strand at 264.891 kb on + strand at 264.891 kb on + strand at 264.891 kb on + strand at 265.077 kb on + strand at 265.172 kb on + strand, within Atu3246 at 265.180 kb on - strand, within Atu3246 at 265.180 kb on - strand, within Atu3246 at 265.199 kb on + strand, within Atu3246 at 265.265 kb on - strand, within Atu3246 at 265.346 kb on - strand, within Atu3246 at 265.356 kb on + strand, within Atu3246 at 265.434 kb on - strand, within Atu3246 at 265.705 kb on - strand, within Atu3246 at 265.719 kb on + strand, within Atu3246 at 265.832 kb on + strand at 265.883 kb on + strand at 265.883 kb on + strand at 265.917 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 263,062 + Atu3244 0.59 -0.9 263,068 - Atu3244 0.59 +1.5 263,113 - Atu3244 0.61 +1.1 263,113 - Atu3244 0.61 +0.1 263,129 + Atu3244 0.62 -2.2 263,159 + Atu3244 0.63 -0.5 263,159 + Atu3244 0.63 +1.7 263,187 - Atu3244 0.64 +0.8 263,239 + Atu3244 0.67 -0.4 263,239 + Atu3244 0.67 -0.1 263,326 + Atu3244 0.70 -0.1 263,404 + Atu3244 0.74 -0.7 263,412 - Atu3244 0.74 -0.9 263,412 - Atu3244 0.74 +1.9 263,427 + Atu3244 0.75 +0.7 263,435 - Atu3244 0.75 +0.1 263,463 + Atu3244 0.76 +1.3 263,471 - Atu3244 0.77 -0.9 263,586 + Atu3244 0.82 +0.6 263,641 - Atu3244 0.84 +0.1 263,703 - Atu3244 0.87 +0.9 263,703 - Atu3244 0.87 -0.3 263,755 + Atu3244 0.89 -1.2 263,790 + +0.2 263,790 + +0.5 263,790 + -0.6 263,798 - +0.8 263,798 - +1.2 263,902 - -1.8 263,956 - +0.0 264,084 + +0.4 264,235 - Atu3245 0.22 +0.4 264,265 + Atu3245 0.25 -1.4 264,288 - Atu3245 0.28 +1.2 264,301 + Atu3245 0.29 -0.1 264,303 - Atu3245 0.29 +0.2 264,368 + Atu3245 0.37 -0.1 264,532 - Atu3245 0.55 +0.1 264,553 + Atu3245 0.57 -0.8 264,564 + Atu3245 0.59 -0.6 264,661 + Atu3245 0.69 +1.6 264,678 + Atu3245 0.71 -0.2 264,687 + Atu3245 0.72 +1.7 264,699 + Atu3245 0.74 +0.9 264,766 - Atu3245 0.81 +1.2 264,777 + Atu3245 0.82 -1.3 264,781 - Atu3245 0.83 +0.8 264,794 + Atu3245 0.84 -0.7 264,802 - Atu3245 0.85 -0.4 264,802 - Atu3245 0.85 -0.2 264,885 - -0.2 264,891 + -0.8 264,891 + +0.3 264,891 + -2.3 265,077 + -2.6 265,172 + Atu3246 0.18 -1.7 265,180 - Atu3246 0.19 -1.3 265,180 - Atu3246 0.19 +0.1 265,199 + Atu3246 0.21 +1.7 265,265 - Atu3246 0.29 +0.7 265,346 - Atu3246 0.38 +2.7 265,356 + Atu3246 0.39 +0.3 265,434 - Atu3246 0.47 -2.1 265,705 - Atu3246 0.77 -1.6 265,719 + Atu3246 0.79 -2.0 265,832 + +0.3 265,883 + +0.8 265,883 + +0.1 265,917 + +0.9
Or see this region's nucleotide sequence