Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3167 and Atu3168 are separated by 123 nucleotides Atu3168 and Atu3169 are separated by 12 nucleotides Atu3169 and Atu3170 are separated by 12 nucleotides
Atu3167: Atu3167 - tagatose 6-phosphate kinase, at 176,823 to 178,100
Atu3167
Atu3168: Atu3168 - sorbitol/mannitol ABC transporter permease, at 178,224 to 179,096
Atu3168
Atu3169: Atu3169 - sorbitol/mannitol ABC transporter permease, at 179,109 to 179,933
Atu3169
Atu3170: Atu3170 - sorbitol/mannitol ABC transporter ATPase, at 179,946 to 180,944
Atu3170
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 177.283 kb on - strand, within Atu3167 at 177.377 kb on + strand, within Atu3167 at 177.377 kb on + strand, within Atu3167 at 177.378 kb on - strand, within Atu3167 at 177.385 kb on - strand, within Atu3167 at 177.385 kb on - strand, within Atu3167 at 177.421 kb on + strand, within Atu3167 at 177.460 kb on + strand, within Atu3167 at 177.468 kb on - strand, within Atu3167 at 177.477 kb on - strand, within Atu3167 at 177.628 kb on + strand, within Atu3167 at 177.794 kb on - strand, within Atu3167 at 177.827 kb on - strand, within Atu3167 at 177.828 kb on - strand, within Atu3167 at 177.885 kb on + strand, within Atu3167 at 177.932 kb on + strand, within Atu3167 at 177.940 kb on - strand, within Atu3167 at 178.031 kb on + strand at 178.031 kb on + strand at 178.089 kb on + strand at 178.246 kb on + strand at 178.254 kb on - strand at 178.256 kb on + strand at 178.264 kb on - strand at 178.297 kb on - strand at 178.359 kb on + strand, within Atu3168 at 178.390 kb on - strand, within Atu3168 at 178.417 kb on + strand, within Atu3168 at 178.735 kb on + strand, within Atu3168 at 178.737 kb on - strand, within Atu3168 at 178.737 kb on - strand, within Atu3168 at 178.743 kb on - strand, within Atu3168 at 178.796 kb on - strand, within Atu3168 at 179.213 kb on + strand, within Atu3169 at 179.221 kb on - strand, within Atu3169 at 179.451 kb on - strand, within Atu3169 at 179.650 kb on - strand, within Atu3169 at 179.811 kb on - strand, within Atu3169 at 179.839 kb on - strand, within Atu3169 at 179.839 kb on - strand, within Atu3169 at 179.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 177,283 - Atu3167 0.36 +1.6 177,377 + Atu3167 0.43 +0.3 177,377 + Atu3167 0.43 +0.4 177,378 - Atu3167 0.43 +0.5 177,385 - Atu3167 0.44 -0.5 177,385 - Atu3167 0.44 -0.8 177,421 + Atu3167 0.47 -0.5 177,460 + Atu3167 0.50 -0.2 177,468 - Atu3167 0.50 +0.5 177,477 - Atu3167 0.51 -2.8 177,628 + Atu3167 0.63 +0.3 177,794 - Atu3167 0.76 -0.9 177,827 - Atu3167 0.79 +1.0 177,828 - Atu3167 0.79 +1.0 177,885 + Atu3167 0.83 +0.2 177,932 + Atu3167 0.87 -0.3 177,940 - Atu3167 0.87 -0.9 178,031 + +0.3 178,031 + -1.4 178,089 + -0.7 178,246 + -1.3 178,254 - -1.5 178,256 + +1.1 178,264 - -0.2 178,297 - -0.3 178,359 + Atu3168 0.15 +0.1 178,390 - Atu3168 0.19 -0.3 178,417 + Atu3168 0.22 -0.6 178,735 + Atu3168 0.59 +2.3 178,737 - Atu3168 0.59 +0.7 178,737 - Atu3168 0.59 -0.4 178,743 - Atu3168 0.59 +1.3 178,796 - Atu3168 0.66 -0.3 179,213 + Atu3169 0.13 +1.0 179,221 - Atu3169 0.14 +1.8 179,451 - Atu3169 0.41 +1.1 179,650 - Atu3169 0.66 +0.9 179,811 - Atu3169 0.85 -0.4 179,839 - Atu3169 0.88 +0.8 179,839 - Atu3169 0.88 +0.7 179,979 - +1.6
Or see this region's nucleotide sequence