Strain Fitness in Agrobacterium fabrum C58 around Atu2446

Experiment: R2A with Vancomycin 0.009 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2445 and Atu2446 are separated by 452 nucleotidesAtu2446 and Atu2447 are separated by 64 nucleotides Atu2445: Atu2445 - RNA polymerase sigma-32 factor, at 2,415,172 to 2,416,074 Atu2445 Atu2446: Atu2446 - hypothetical protein, at 2,416,527 to 2,418,863 Atu2446 Atu2447: Atu2447 - adenylosuccinate synthetase, at 2,418,928 to 2,420,226 Atu2447 Position (kb) 2416 2417 2418 2419Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2416.029 kb on - strandat 2416.251 kb on + strandat 2416.251 kb on + strandat 2416.388 kb on + strandat 2416.397 kb on + strandat 2416.401 kb on + strandat 2416.409 kb on - strandat 2416.542 kb on + strandat 2416.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM
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2,416,029 - -0.0
2,416,251 + -0.2
2,416,251 + +0.4
2,416,388 + +1.0
2,416,397 + -0.1
2,416,401 + -2.4
2,416,409 - +0.1
2,416,542 + -3.8
2,416,581 - -1.7

Or see this region's nucleotide sequence