Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1093 and Atu1094 are separated by 169 nucleotides Atu1094 and Atu1095 are separated by 78 nucleotides
Atu1093: Atu1093 - aldo/keto reductase, at 1,082,770 to 1,083,813
Atu1093
Atu1094: Atu1094 - malonyl-CoA:acyl carrier protein transacylase, at 1,083,983 to 1,084,978
Atu1094
Atu1095: Atu1095 - 3-oxoacyl-(acyl carrier protein) reductase, at 1,085,057 to 1,085,794
Atu1095
Position (kb)
1083
1084
1085 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1082.989 kb on - strand, within Atu1093 at 1083.128 kb on - strand, within Atu1093 at 1083.167 kb on - strand, within Atu1093 at 1083.180 kb on + strand, within Atu1093 at 1083.188 kb on - strand, within Atu1093 at 1083.188 kb on - strand, within Atu1093 at 1083.190 kb on + strand, within Atu1093 at 1083.226 kb on - strand, within Atu1093 at 1083.262 kb on - strand, within Atu1093 at 1083.307 kb on - strand, within Atu1093 at 1083.374 kb on - strand, within Atu1093 at 1083.436 kb on - strand, within Atu1093 at 1083.438 kb on + strand, within Atu1093 at 1083.452 kb on + strand, within Atu1093 at 1083.460 kb on - strand, within Atu1093 at 1083.534 kb on + strand, within Atu1093 at 1083.602 kb on + strand, within Atu1093 at 1083.610 kb on - strand, within Atu1093 at 1083.612 kb on - strand, within Atu1093 at 1083.653 kb on + strand, within Atu1093 at 1083.661 kb on - strand, within Atu1093 at 1083.668 kb on - strand, within Atu1093 at 1083.688 kb on + strand, within Atu1093 at 1083.706 kb on - strand, within Atu1093 at 1083.740 kb on - strand at 1083.743 kb on + strand at 1083.766 kb on + strand at 1083.774 kb on - strand at 1083.778 kb on + strand at 1083.793 kb on + strand at 1083.849 kb on + strand at 1083.997 kb on + strand at 1085.819 kb on + strand at 1085.899 kb on + strand at 1085.899 kb on + strand at 1085.899 kb on + strand at 1085.906 kb on + strand at 1085.912 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 1,082,989 - Atu1093 0.21 +0.4 1,083,128 - Atu1093 0.34 +0.7 1,083,167 - Atu1093 0.38 +0.9 1,083,180 + Atu1093 0.39 +0.2 1,083,188 - Atu1093 0.40 -0.8 1,083,188 - Atu1093 0.40 +0.4 1,083,190 + Atu1093 0.40 -0.1 1,083,226 - Atu1093 0.44 -0.7 1,083,262 - Atu1093 0.47 -0.7 1,083,307 - Atu1093 0.51 +0.6 1,083,374 - Atu1093 0.58 +0.3 1,083,436 - Atu1093 0.64 +0.8 1,083,438 + Atu1093 0.64 +1.9 1,083,452 + Atu1093 0.65 -0.4 1,083,460 - Atu1093 0.66 +1.6 1,083,534 + Atu1093 0.73 +0.0 1,083,602 + Atu1093 0.80 +1.0 1,083,610 - Atu1093 0.80 -0.5 1,083,612 - Atu1093 0.81 +0.2 1,083,653 + Atu1093 0.85 +2.2 1,083,661 - Atu1093 0.85 +1.6 1,083,668 - Atu1093 0.86 +0.3 1,083,688 + Atu1093 0.88 +1.5 1,083,706 - Atu1093 0.90 -0.8 1,083,740 - +0.1 1,083,743 + -0.3 1,083,766 + +1.6 1,083,774 - -1.6 1,083,778 + +0.0 1,083,793 + -0.7 1,083,849 + +0.2 1,083,997 + -1.6 1,085,819 + -2.8 1,085,899 + -3.0 1,085,899 + -1.6 1,085,899 + -0.9 1,085,906 + -1.7 1,085,912 - -1.7
Or see this region's nucleotide sequence