Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8142 and Atu0970 are separated by 93 nucleotides Atu0970 and Atu0971 overlap by 11 nucleotides Atu0971 and Atu0972 are separated by 207 nucleotides Atu0972 and Atu0973 are separated by 150 nucleotides
Atu8142: Atu8142 - hypothetical protein, at 958,504 to 958,758
Atu8142
Atu0970: Atu0970 - two component response regulator, at 958,852 to 959,523
Atu0970
Atu0971: Atu0971 - two component sensor kinase, at 959,513 to 960,913
Atu0971
Atu0972: Atu0972 - lipA protein, at 961,121 to 961,549
Atu0972
Atu0973: Atu0973 - cycH protein, at 961,700 to 962,872
Atu0973
Position (kb) 959
960
961 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 958.867 kb on + strand at 959.105 kb on - strand, within Atu0970 at 959.230 kb on - strand, within Atu0970 at 959.333 kb on - strand, within Atu0970 at 959.518 kb on + strand at 959.676 kb on - strand, within Atu0971 at 959.676 kb on - strand, within Atu0971 at 959.763 kb on + strand, within Atu0971 at 959.766 kb on - strand, within Atu0971 at 959.804 kb on + strand, within Atu0971 at 959.915 kb on - strand, within Atu0971 at 960.144 kb on - strand, within Atu0971 at 960.242 kb on - strand, within Atu0971 at 960.380 kb on + strand, within Atu0971 at 960.551 kb on - strand, within Atu0971 at 960.581 kb on + strand, within Atu0971 at 960.618 kb on - strand, within Atu0971 at 960.654 kb on - strand, within Atu0971 at 960.738 kb on - strand, within Atu0971 at 960.764 kb on + strand, within Atu0971 at 961.056 kb on + strand at 961.089 kb on - strand at 961.248 kb on - strand, within Atu0972 at 961.326 kb on - strand, within Atu0972 at 961.358 kb on + strand, within Atu0972 at 961.373 kb on + strand, within Atu0972 at 961.396 kb on + strand, within Atu0972 at 961.410 kb on - strand, within Atu0972 at 961.488 kb on + strand, within Atu0972 at 961.538 kb on + strand at 961.546 kb on - strand at 961.589 kb on + strand at 961.603 kb on + strand at 961.611 kb on - strand at 961.611 kb on - strand at 961.642 kb on - strand at 961.684 kb on - strand at 961.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 958,867 + +0.9 959,105 - Atu0970 0.38 +0.7 959,230 - Atu0970 0.56 +0.3 959,333 - Atu0970 0.72 +1.6 959,518 + -1.2 959,676 - Atu0971 0.12 +1.5 959,676 - Atu0971 0.12 -0.1 959,763 + Atu0971 0.18 +0.2 959,766 - Atu0971 0.18 -0.1 959,804 + Atu0971 0.21 +0.9 959,915 - Atu0971 0.29 +0.2 960,144 - Atu0971 0.45 +1.3 960,242 - Atu0971 0.52 +0.9 960,380 + Atu0971 0.62 -0.2 960,551 - Atu0971 0.74 +0.7 960,581 + Atu0971 0.76 +1.1 960,618 - Atu0971 0.79 +2.8 960,654 - Atu0971 0.81 +3.2 960,738 - Atu0971 0.87 +2.1 960,764 + Atu0971 0.89 -1.0 961,056 + -3.8 961,089 - -2.7 961,248 - Atu0972 0.30 -3.7 961,326 - Atu0972 0.48 -3.7 961,358 + Atu0972 0.55 -2.0 961,373 + Atu0972 0.59 +1.2 961,396 + Atu0972 0.64 -4.5 961,410 - Atu0972 0.67 -2.7 961,488 + Atu0972 0.86 -2.8 961,538 + -0.7 961,546 - -3.7 961,589 + +0.1 961,603 + -2.0 961,611 - +0.2 961,611 - -0.5 961,642 - +0.4 961,684 - -0.4 961,712 - +0.3
Or see this region's nucleotide sequence