Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0787 and Atu0788 are separated by 68 nucleotides Atu0788 and Atu0789 are separated by 212 nucleotides Atu0789 and Atu0790 are separated by 10 nucleotides
Atu0787: Atu0787 - threonine synthase, at 784,519 to 786,090
Atu0787
Atu0788: Atu0788 - hypothetical protein, at 786,159 to 786,731
Atu0788
Atu0789: Atu0789 - hypothetical protein, at 786,944 to 787,129
Atu0789
Atu0790: Atu0790 - hypothetical protein, at 787,140 to 787,829
Atu0790
Position (kb) 786
787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 785.933 kb on - strand at 786.073 kb on + strand at 786.073 kb on + strand at 786.081 kb on - strand at 786.084 kb on + strand at 786.092 kb on - strand at 786.092 kb on - strand at 786.257 kb on + strand, within Atu0788 at 786.272 kb on + strand, within Atu0788 at 786.272 kb on + strand, within Atu0788 at 786.272 kb on + strand, within Atu0788 at 786.414 kb on + strand, within Atu0788 at 786.427 kb on - strand, within Atu0788 at 786.467 kb on + strand, within Atu0788 at 786.513 kb on + strand, within Atu0788 at 786.539 kb on - strand, within Atu0788 at 786.710 kb on + strand at 786.710 kb on + strand at 786.815 kb on - strand at 786.863 kb on + strand at 786.873 kb on + strand at 786.873 kb on + strand at 786.873 kb on + strand at 786.873 kb on + strand at 786.881 kb on - strand at 786.881 kb on - strand at 786.881 kb on - strand at 786.942 kb on + strand at 787.254 kb on + strand, within Atu0790 at 787.254 kb on + strand, within Atu0790 at 787.254 kb on + strand, within Atu0790 at 787.262 kb on - strand, within Atu0790 at 787.367 kb on + strand, within Atu0790 at 787.372 kb on + strand, within Atu0790 at 787.445 kb on - strand, within Atu0790 at 787.504 kb on - strand, within Atu0790 at 787.504 kb on - strand, within Atu0790 at 787.591 kb on + strand, within Atu0790
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 785,933 - -2.0 786,073 + -1.0 786,073 + -0.1 786,081 - +1.1 786,084 + +0.9 786,092 - -0.4 786,092 - -0.3 786,257 + Atu0788 0.17 -1.2 786,272 + Atu0788 0.20 -1.2 786,272 + Atu0788 0.20 -0.2 786,272 + Atu0788 0.20 -2.4 786,414 + Atu0788 0.45 -2.9 786,427 - Atu0788 0.47 -2.1 786,467 + Atu0788 0.54 -1.2 786,513 + Atu0788 0.62 -0.8 786,539 - Atu0788 0.66 -1.7 786,710 + -0.8 786,710 + -1.2 786,815 - +0.4 786,863 + +0.1 786,873 + +2.0 786,873 + +0.7 786,873 + -0.3 786,873 + -0.5 786,881 - +0.3 786,881 - -0.2 786,881 - +1.1 786,942 + -0.1 787,254 + Atu0790 0.17 +0.1 787,254 + Atu0790 0.17 +0.2 787,254 + Atu0790 0.17 +4.1 787,262 - Atu0790 0.18 +0.9 787,367 + Atu0790 0.33 -1.1 787,372 + Atu0790 0.34 +2.1 787,445 - Atu0790 0.44 +1.0 787,504 - Atu0790 0.53 -0.7 787,504 - Atu0790 0.53 -0.9 787,591 + Atu0790 0.65 +0.3
Or see this region's nucleotide sequence