Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0711 and Atu0712 are separated by 342 nucleotides Atu0712 and Atu0713 are separated by 270 nucleotides Atu0713 and Atu0714 are separated by 60 nucleotides
Atu0711: Atu0711 - potassium uptake protein, at 711,743 to 713,662
Atu0711
Atu0712: Atu0712 - hypothetical protein, at 714,005 to 715,186
Atu0712
Atu0713: Atu0713 - ATP synthase, subunit I, at 715,457 to 715,822
Atu0713
Atu0714: Atu0714 - ATP synthase A chain, at 715,883 to 716,632
Atu0714
Position (kb) 714
715
716 Strain fitness (log2 ratio) -2
-1
0
1
2 at 713.019 kb on - strand, within Atu0711 at 713.282 kb on - strand, within Atu0711 at 713.286 kb on + strand, within Atu0711 at 713.294 kb on - strand, within Atu0711 at 713.356 kb on + strand, within Atu0711 at 713.433 kb on + strand, within Atu0711 at 713.444 kb on + strand, within Atu0711 at 713.615 kb on - strand at 713.626 kb on - strand at 713.754 kb on - strand at 713.756 kb on + strand at 713.764 kb on - strand at 713.774 kb on - strand at 714.026 kb on - strand at 714.026 kb on - strand at 714.051 kb on - strand at 714.091 kb on - strand at 714.115 kb on - strand at 714.215 kb on + strand, within Atu0712 at 714.234 kb on + strand, within Atu0712 at 714.325 kb on + strand, within Atu0712 at 714.327 kb on - strand, within Atu0712 at 714.417 kb on - strand, within Atu0712 at 714.418 kb on - strand, within Atu0712 at 714.491 kb on + strand, within Atu0712 at 714.533 kb on + strand, within Atu0712 at 714.536 kb on + strand, within Atu0712 at 714.702 kb on - strand, within Atu0712 at 714.721 kb on + strand, within Atu0712 at 714.729 kb on - strand, within Atu0712 at 714.743 kb on - strand, within Atu0712 at 714.821 kb on - strand, within Atu0712 at 714.888 kb on + strand, within Atu0712 at 714.950 kb on + strand, within Atu0712 at 714.985 kb on + strand, within Atu0712 at 715.162 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 713,019 - Atu0711 0.66 +0.8 713,282 - Atu0711 0.80 +0.6 713,286 + Atu0711 0.80 +1.7 713,294 - Atu0711 0.81 +0.8 713,356 + Atu0711 0.84 +1.2 713,433 + Atu0711 0.88 +0.3 713,444 + Atu0711 0.89 -0.1 713,615 - +2.1 713,626 - +0.8 713,754 - -0.2 713,756 + +0.3 713,764 - -0.7 713,774 - +1.0 714,026 - -1.4 714,026 - -0.4 714,051 - +0.4 714,091 - +0.0 714,115 - -2.2 714,215 + Atu0712 0.18 +0.9 714,234 + Atu0712 0.19 +0.0 714,325 + Atu0712 0.27 -0.1 714,327 - Atu0712 0.27 -1.0 714,417 - Atu0712 0.35 +1.2 714,418 - Atu0712 0.35 +0.5 714,491 + Atu0712 0.41 +1.3 714,533 + Atu0712 0.45 -1.8 714,536 + Atu0712 0.45 -0.2 714,702 - Atu0712 0.59 +0.3 714,721 + Atu0712 0.61 +0.9 714,729 - Atu0712 0.61 -0.7 714,743 - Atu0712 0.62 +0.8 714,821 - Atu0712 0.69 +0.1 714,888 + Atu0712 0.75 +0.5 714,950 + Atu0712 0.80 +0.6 714,985 + Atu0712 0.83 -0.4 715,162 + -0.0
Or see this region's nucleotide sequence