Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0569 and Atu0570 overlap by 4 nucleotides Atu0570 and Atu0571 overlap by 4 nucleotides
Atu0569: Atu0569 - flagellar motor protein, PAL/OmpA family, at 553,440 to 554,741
Atu0569
Atu0570: Atu0570 - Chemotaxis protein, at 554,738 to 556,018
Atu0570
Atu0571: Atu0571 - chemotaxis MotD protein, at 556,015 to 557,364
Atu0571
Position (kb) 554
555
556
557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 553.766 kb on - strand, within Atu0569 at 553.782 kb on + strand, within Atu0569 at 553.796 kb on - strand, within Atu0569 at 553.805 kb on - strand, within Atu0569 at 553.847 kb on + strand, within Atu0569 at 553.855 kb on - strand, within Atu0569 at 553.892 kb on + strand, within Atu0569 at 553.910 kb on + strand, within Atu0569 at 554.048 kb on - strand, within Atu0569 at 554.088 kb on + strand, within Atu0569 at 554.095 kb on - strand, within Atu0569 at 554.124 kb on + strand, within Atu0569 at 554.212 kb on + strand, within Atu0569 at 554.237 kb on + strand, within Atu0569 at 554.285 kb on + strand, within Atu0569 at 554.286 kb on + strand, within Atu0569 at 554.448 kb on + strand, within Atu0569 at 554.537 kb on + strand, within Atu0569 at 554.544 kb on + strand, within Atu0569 at 554.544 kb on + strand, within Atu0569 at 554.566 kb on - strand, within Atu0569 at 554.600 kb on - strand, within Atu0569 at 554.686 kb on - strand at 554.854 kb on - strand at 554.881 kb on + strand, within Atu0570 at 554.951 kb on + strand, within Atu0570 at 554.951 kb on + strand, within Atu0570 at 555.010 kb on + strand, within Atu0570 at 555.013 kb on - strand, within Atu0570 at 555.042 kb on + strand, within Atu0570 at 555.042 kb on + strand, within Atu0570 at 555.050 kb on - strand, within Atu0570 at 555.104 kb on - strand, within Atu0570 at 555.145 kb on + strand, within Atu0570 at 555.184 kb on + strand, within Atu0570 at 555.192 kb on - strand, within Atu0570 at 555.261 kb on + strand, within Atu0570 at 555.280 kb on + strand, within Atu0570 at 555.340 kb on - strand, within Atu0570 at 555.368 kb on + strand, within Atu0570 at 555.373 kb on + strand, within Atu0570 at 555.383 kb on - strand, within Atu0570 at 555.479 kb on + strand, within Atu0570 at 555.511 kb on + strand, within Atu0570 at 555.511 kb on + strand, within Atu0570 at 555.616 kb on + strand, within Atu0570 at 555.632 kb on - strand, within Atu0570 at 555.663 kb on + strand, within Atu0570 at 555.690 kb on + strand, within Atu0570 at 555.743 kb on + strand, within Atu0570 at 555.744 kb on - strand, within Atu0570 at 555.744 kb on - strand, within Atu0570 at 555.753 kb on + strand, within Atu0570 at 555.822 kb on - strand, within Atu0570 at 555.841 kb on - strand, within Atu0570 at 556.089 kb on + strand at 556.194 kb on + strand, within Atu0571 at 556.349 kb on - strand, within Atu0571 at 556.440 kb on + strand, within Atu0571 at 556.440 kb on + strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.487 kb on - strand, within Atu0571 at 556.548 kb on + strand, within Atu0571 at 556.556 kb on - strand, within Atu0571 at 556.566 kb on - strand, within Atu0571 at 556.577 kb on - strand, within Atu0571 at 556.587 kb on + strand, within Atu0571 at 556.590 kb on - strand, within Atu0571 at 556.611 kb on + strand, within Atu0571 at 556.710 kb on + strand, within Atu0571 at 556.787 kb on - strand, within Atu0571 at 556.872 kb on + strand, within Atu0571 at 556.872 kb on + strand, within Atu0571 at 556.880 kb on - strand, within Atu0571 at 556.880 kb on - strand, within Atu0571 at 556.880 kb on - strand, within Atu0571 at 556.892 kb on - strand, within Atu0571 at 556.902 kb on + strand, within Atu0571 at 556.915 kb on + strand, within Atu0571 at 556.915 kb on + strand, within Atu0571 at 556.920 kb on + strand, within Atu0571 at 556.923 kb on - strand, within Atu0571 at 556.940 kb on + strand, within Atu0571 at 556.946 kb on + strand, within Atu0571 at 556.954 kb on - strand, within Atu0571
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 553,766 - Atu0569 0.25 -2.0 553,782 + Atu0569 0.26 -2.0 553,796 - Atu0569 0.27 -1.1 553,805 - Atu0569 0.28 -1.0 553,847 + Atu0569 0.31 -0.2 553,855 - Atu0569 0.32 -1.9 553,892 + Atu0569 0.35 -3.2 553,910 + Atu0569 0.36 -1.2 554,048 - Atu0569 0.47 -0.8 554,088 + Atu0569 0.50 -0.1 554,095 - Atu0569 0.50 -1.6 554,124 + Atu0569 0.53 -2.0 554,212 + Atu0569 0.59 -1.6 554,237 + Atu0569 0.61 -0.2 554,285 + Atu0569 0.65 -1.9 554,286 + Atu0569 0.65 -0.6 554,448 + Atu0569 0.77 -2.4 554,537 + Atu0569 0.84 -1.1 554,544 + Atu0569 0.85 -1.5 554,544 + Atu0569 0.85 -1.3 554,566 - Atu0569 0.86 -2.1 554,600 - Atu0569 0.89 -0.7 554,686 - -1.8 554,854 - -1.3 554,881 + Atu0570 0.11 -3.5 554,951 + Atu0570 0.17 -2.0 554,951 + Atu0570 0.17 -2.1 555,010 + Atu0570 0.21 +0.6 555,013 - Atu0570 0.21 -2.0 555,042 + Atu0570 0.24 -1.5 555,042 + Atu0570 0.24 -2.7 555,050 - Atu0570 0.24 +0.6 555,104 - Atu0570 0.29 -0.5 555,145 + Atu0570 0.32 -0.3 555,184 + Atu0570 0.35 -1.3 555,192 - Atu0570 0.35 -1.9 555,261 + Atu0570 0.41 -1.0 555,280 + Atu0570 0.42 -2.1 555,340 - Atu0570 0.47 -0.2 555,368 + Atu0570 0.49 -2.0 555,373 + Atu0570 0.50 -1.1 555,383 - Atu0570 0.50 -0.9 555,479 + Atu0570 0.58 -0.8 555,511 + Atu0570 0.60 -1.1 555,511 + Atu0570 0.60 -2.5 555,616 + Atu0570 0.69 -2.3 555,632 - Atu0570 0.70 -2.2 555,663 + Atu0570 0.72 -0.0 555,690 + Atu0570 0.74 -2.6 555,743 + Atu0570 0.78 -1.5 555,744 - Atu0570 0.79 -0.3 555,744 - Atu0570 0.79 -0.8 555,753 + Atu0570 0.79 -0.8 555,822 - Atu0570 0.85 -2.4 555,841 - Atu0570 0.86 -0.4 556,089 + +0.2 556,194 + Atu0571 0.13 -1.8 556,349 - Atu0571 0.25 -0.5 556,440 + Atu0571 0.31 +1.1 556,440 + Atu0571 0.31 -1.0 556,448 - Atu0571 0.32 -1.8 556,448 - Atu0571 0.32 -2.3 556,448 - Atu0571 0.32 -1.1 556,448 - Atu0571 0.32 -0.2 556,487 - Atu0571 0.35 -1.5 556,548 + Atu0571 0.39 -0.2 556,556 - Atu0571 0.40 +1.0 556,566 - Atu0571 0.41 -0.5 556,577 - Atu0571 0.42 -0.3 556,587 + Atu0571 0.42 -0.3 556,590 - Atu0571 0.43 -1.0 556,611 + Atu0571 0.44 -0.4 556,710 + Atu0571 0.51 -1.4 556,787 - Atu0571 0.57 -1.0 556,872 + Atu0571 0.63 -0.6 556,872 + Atu0571 0.63 +1.9 556,880 - Atu0571 0.64 -0.3 556,880 - Atu0571 0.64 -1.8 556,880 - Atu0571 0.64 -0.4 556,892 - Atu0571 0.65 -0.6 556,902 + Atu0571 0.66 +0.5 556,915 + Atu0571 0.67 +1.2 556,915 + Atu0571 0.67 +0.3 556,920 + Atu0571 0.67 -1.0 556,923 - Atu0571 0.67 +0.1 556,940 + Atu0571 0.69 -0.8 556,946 + Atu0571 0.69 -2.6 556,954 - Atu0571 0.70 -2.5
Or see this region's nucleotide sequence