Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0376 and Atu0377 are separated by 42 nucleotides Atu0377 and Atu0378 are separated by 101 nucleotides Atu0378 and Atu0379 are separated by 106 nucleotides
Atu0376: Atu0376 - hypothetical protein, at 371,002 to 371,259
Atu0376
Atu0377: Atu0377 - hypothetical protein, at 371,302 to 371,898
Atu0377
Atu0378: Atu0378 - hydrolase, at 372,000 to 372,713
Atu0378
Atu0379: Atu0379 - hypothetical protein, at 372,820 to 373,737
Atu0379
Position (kb) 371
372
373 Strain fitness (log2 ratio) -1
0
1
2
3 at 371.251 kb on - strand at 371.261 kb on - strand at 371.410 kb on - strand, within Atu0377 at 371.413 kb on - strand, within Atu0377 at 371.464 kb on - strand, within Atu0377 at 371.481 kb on - strand, within Atu0377 at 371.745 kb on + strand, within Atu0377 at 371.850 kb on + strand at 371.870 kb on - strand at 371.940 kb on + strand at 371.948 kb on - strand at 372.091 kb on + strand, within Atu0378 at 372.178 kb on + strand, within Atu0378 at 372.186 kb on - strand, within Atu0378 at 372.236 kb on - strand, within Atu0378 at 372.382 kb on + strand, within Atu0378 at 372.390 kb on - strand, within Atu0378 at 372.390 kb on - strand, within Atu0378 at 372.500 kb on - strand, within Atu0378 at 372.502 kb on - strand, within Atu0378 at 372.634 kb on - strand, within Atu0378 at 372.816 kb on + strand at 372.816 kb on + strand at 372.818 kb on - strand at 372.870 kb on + strand at 372.899 kb on - strand at 372.899 kb on - strand at 372.899 kb on - strand at 372.899 kb on - strand at 372.899 kb on - strand at 373.027 kb on + strand, within Atu0379 at 373.117 kb on + strand, within Atu0379 at 373.125 kb on - strand, within Atu0379 at 373.170 kb on - strand, within Atu0379 at 373.332 kb on - strand, within Atu0379 at 373.335 kb on + strand, within Atu0379 at 373.342 kb on + strand, within Atu0379 at 373.343 kb on - strand, within Atu0379 at 373.463 kb on + strand, within Atu0379 at 373.563 kb on + strand, within Atu0379 at 373.631 kb on + strand, within Atu0379 at 373.673 kb on + strand at 373.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 371,251 - +1.3 371,261 - +0.7 371,410 - Atu0377 0.18 +1.6 371,413 - Atu0377 0.19 -0.3 371,464 - Atu0377 0.27 +0.1 371,481 - Atu0377 0.30 -0.3 371,745 + Atu0377 0.74 -0.4 371,850 + +0.3 371,870 - +0.0 371,940 + +0.3 371,948 - -0.2 372,091 + Atu0378 0.13 -0.5 372,178 + Atu0378 0.25 -0.1 372,186 - Atu0378 0.26 -0.4 372,236 - Atu0378 0.33 -1.3 372,382 + Atu0378 0.54 -0.2 372,390 - Atu0378 0.55 -0.1 372,390 - Atu0378 0.55 +0.6 372,500 - Atu0378 0.70 -1.6 372,502 - Atu0378 0.70 -0.8 372,634 - Atu0378 0.89 -1.3 372,816 + -0.4 372,816 + +0.5 372,818 - +0.3 372,870 + -0.6 372,899 - -0.5 372,899 - -1.4 372,899 - +1.1 372,899 - +0.2 372,899 - -0.3 373,027 + Atu0379 0.23 -1.3 373,117 + Atu0379 0.32 +0.3 373,125 - Atu0379 0.33 +3.3 373,170 - Atu0379 0.38 -0.3 373,332 - Atu0379 0.56 -0.3 373,335 + Atu0379 0.56 +0.1 373,342 + Atu0379 0.57 -0.6 373,343 - Atu0379 0.57 +0.6 373,463 + Atu0379 0.70 -0.2 373,563 + Atu0379 0.81 +0.2 373,631 + Atu0379 0.88 -1.4 373,673 + +1.1 373,691 - -0.3
Or see this region's nucleotide sequence