Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0360 and Atu0361 are separated by 133 nucleotides Atu0361 and Atu0362 are separated by 186 nucleotides Atu0362 and Atu0363 are separated by 171 nucleotides Atu0363 and Atu0364 are separated by 63 nucleotides
Atu0360: Atu0360 - apolipoprotein N-acyltransferase, at 354,024 to 355,613
Atu0360
Atu0361: Atu0361 - transcriptional regulator, at 355,747 to 356,166
Atu0361
Atu0362: Atu0362 - S-adenosylmethionine synthetase, at 356,353 to 357,615
Atu0362
Atu0363: Atu0363 - putative tRNA (guanine-N(7)-)-methyltransferase, at 357,787 to 358,485
Atu0363
Atu0364: Atu0364 - ribokinase, at 358,549 to 359,448
Atu0364
Position (kb) 356
357
358 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 355.358 kb on + strand, within Atu0360 at 355.450 kb on + strand, within Atu0360 at 355.639 kb on + strand at 355.715 kb on + strand at 355.723 kb on - strand at 355.767 kb on + strand at 355.775 kb on - strand at 355.775 kb on - strand at 355.853 kb on - strand, within Atu0361 at 356.000 kb on + strand, within Atu0361 at 356.000 kb on + strand, within Atu0361 at 356.026 kb on - strand, within Atu0361 at 356.124 kb on - strand, within Atu0361 at 356.206 kb on - strand at 357.717 kb on + strand at 357.751 kb on + strand at 357.847 kb on + strand at 357.850 kb on - strand at 357.872 kb on - strand, within Atu0363 at 357.902 kb on - strand, within Atu0363 at 357.904 kb on + strand, within Atu0363 at 357.991 kb on + strand, within Atu0363 at 358.023 kb on + strand, within Atu0363 at 358.185 kb on + strand, within Atu0363 at 358.185 kb on + strand, within Atu0363 at 358.185 kb on + strand, within Atu0363 at 358.185 kb on + strand, within Atu0363 at 358.193 kb on - strand, within Atu0363 at 358.193 kb on - strand, within Atu0363 at 358.193 kb on - strand, within Atu0363 at 358.269 kb on + strand, within Atu0363 at 358.295 kb on - strand, within Atu0363 at 358.311 kb on - strand, within Atu0363 at 358.412 kb on - strand, within Atu0363 at 358.422 kb on - strand at 358.583 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 355,358 + Atu0360 0.84 +3.6 355,450 + Atu0360 0.90 +3.5 355,639 + -0.5 355,715 + +0.7 355,723 - +0.4 355,767 + +0.1 355,775 - +0.2 355,775 - +3.1 355,853 - Atu0361 0.25 +1.1 356,000 + Atu0361 0.60 +1.2 356,000 + Atu0361 0.60 +2.6 356,026 - Atu0361 0.66 +3.3 356,124 - Atu0361 0.90 +0.9 356,206 - +0.0 357,717 + +1.8 357,751 + -2.2 357,847 + -0.6 357,850 - +0.4 357,872 - Atu0363 0.12 -0.7 357,902 - Atu0363 0.16 -0.3 357,904 + Atu0363 0.17 -0.0 357,991 + Atu0363 0.29 -0.3 358,023 + Atu0363 0.34 +0.3 358,185 + Atu0363 0.57 +0.4 358,185 + Atu0363 0.57 +1.3 358,185 + Atu0363 0.57 +0.0 358,185 + Atu0363 0.57 -0.5 358,193 - Atu0363 0.58 +0.4 358,193 - Atu0363 0.58 +1.8 358,193 - Atu0363 0.58 +0.5 358,269 + Atu0363 0.69 +1.1 358,295 - Atu0363 0.73 -0.3 358,311 - Atu0363 0.75 +1.4 358,412 - Atu0363 0.89 -1.8 358,422 - +0.3 358,583 + -0.6
Or see this region's nucleotide sequence