Strain Fitness in Agrobacterium fabrum C58 around Atu0326

Experiment: R2A with Vancomycin 0.009 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0325 and Atu0326 are separated by 5 nucleotidesAtu0326 and Atu0327 are separated by 17 nucleotidesAtu0327 and Atu0328 are separated by 136 nucleotides Atu0325: Atu0325 - oxygen-independent coproporphyrinogen III oxidase, at 319,179 to 320,378 Atu0325 Atu0326: Atu0326 - putative deoxyribonucleotide triphosphate pyrophosphatase, at 320,384 to 321,028 Atu0326 Atu0327: Atu0327 - ribonuclease PH, at 321,046 to 321,762 Atu0327 Atu0328: Atu0328 - heat-inducible transcription repressor, at 321,899 to 322,990 Atu0328 Position (kb) 320 321 322Strain fitness (log2 ratio) -1 0 1at 320.584 kb on - strand, within Atu0326at 321.799 kb on - strandat 321.799 kb on - strandat 321.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM
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320,584 - Atu0326 0.31 +0.9
321,799 - -0.6
321,799 - +0.7
321,977 + -1.3

Or see this region's nucleotide sequence