Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0286 and Atu0287 overlap by 1 nucleotides Atu0287 and Atu0288 are separated by 41 nucleotides
Atu0286: Atu0286 - hypothetical protein, at 279,498 to 280,619
Atu0286
Atu0287: Atu0287 - hypothetical protein, at 280,619 to 282,160
Atu0287
Atu0288: Atu0288 - hypothetical protein, at 282,202 to 283,479
Atu0288
Position (kb) 280
281
282
283 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 279.630 kb on - strand, within Atu0286 at 279.647 kb on - strand, within Atu0286 at 279.728 kb on + strand, within Atu0286 at 279.753 kb on + strand, within Atu0286 at 279.761 kb on - strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.780 kb on - strand, within Atu0286 at 279.780 kb on - strand, within Atu0286 at 279.780 kb on - strand, within Atu0286 at 279.801 kb on + strand, within Atu0286 at 279.821 kb on + strand, within Atu0286 at 279.857 kb on - strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.901 kb on - strand, within Atu0286 at 279.901 kb on - strand, within Atu0286 at 279.901 kb on - strand, within Atu0286 at 279.911 kb on - strand, within Atu0286 at 279.921 kb on - strand, within Atu0286 at 280.004 kb on - strand, within Atu0286 at 280.142 kb on + strand, within Atu0286 at 280.142 kb on + strand, within Atu0286 at 280.208 kb on + strand, within Atu0286 at 280.230 kb on - strand, within Atu0286 at 280.258 kb on + strand, within Atu0286 at 280.258 kb on + strand, within Atu0286 at 280.266 kb on - strand, within Atu0286 at 280.266 kb on - strand, within Atu0286 at 280.266 kb on - strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.340 kb on - strand, within Atu0286 at 280.340 kb on - strand, within Atu0286 at 280.340 kb on - strand, within Atu0286 at 280.415 kb on + strand, within Atu0286 at 280.421 kb on - strand, within Atu0286 at 280.453 kb on - strand, within Atu0286 at 280.461 kb on + strand, within Atu0286 at 280.500 kb on - strand, within Atu0286 at 280.502 kb on + strand, within Atu0286 at 280.507 kb on + strand at 280.510 kb on - strand at 280.510 kb on - strand at 280.515 kb on - strand at 280.538 kb on - strand at 280.681 kb on - strand at 280.734 kb on - strand at 280.734 kb on - strand at 280.764 kb on - strand at 280.777 kb on - strand, within Atu0287 at 280.815 kb on + strand, within Atu0287 at 280.815 kb on + strand, within Atu0287 at 280.875 kb on - strand, within Atu0287 at 280.896 kb on - strand, within Atu0287 at 281.006 kb on + strand, within Atu0287 at 281.147 kb on + strand, within Atu0287 at 281.147 kb on - strand, within Atu0287 at 281.245 kb on + strand, within Atu0287 at 281.305 kb on + strand, within Atu0287 at 281.305 kb on - strand, within Atu0287 at 281.364 kb on - strand, within Atu0287 at 281.385 kb on + strand, within Atu0287 at 281.407 kb on + strand, within Atu0287 at 281.407 kb on + strand, within Atu0287 at 281.409 kb on - strand, within Atu0287 at 281.446 kb on + strand, within Atu0287 at 281.487 kb on + strand, within Atu0287 at 281.492 kb on - strand, within Atu0287 at 281.496 kb on - strand, within Atu0287 at 281.501 kb on - strand, within Atu0287 at 281.702 kb on - strand, within Atu0287 at 281.746 kb on - strand, within Atu0287 at 281.820 kb on - strand, within Atu0287 at 281.829 kb on - strand, within Atu0287 at 281.945 kb on - strand, within Atu0287 at 282.033 kb on + strand at 282.037 kb on - strand at 282.079 kb on + strand at 282.223 kb on - strand at 282.293 kb on + strand at 282.293 kb on + strand at 282.363 kb on - strand, within Atu0288 at 282.436 kb on - strand, within Atu0288 at 282.464 kb on + strand, within Atu0288 at 282.465 kb on - strand, within Atu0288 at 282.583 kb on - strand, within Atu0288 at 282.628 kb on + strand, within Atu0288 at 282.640 kb on + strand, within Atu0288 at 282.646 kb on - strand, within Atu0288 at 282.669 kb on + strand, within Atu0288 at 282.671 kb on + strand, within Atu0288 at 282.671 kb on + strand, within Atu0288 at 282.671 kb on + strand, within Atu0288 at 282.679 kb on - strand, within Atu0288 at 282.679 kb on - strand, within Atu0288 at 282.679 kb on - strand, within Atu0288 at 282.679 kb on - strand, within Atu0288 at 282.702 kb on - strand, within Atu0288 at 282.727 kb on + strand, within Atu0288 at 282.746 kb on + strand, within Atu0288 at 282.754 kb on - strand, within Atu0288 at 282.773 kb on + strand, within Atu0288 at 282.774 kb on - strand, within Atu0288 at 282.774 kb on - strand, within Atu0288 at 282.781 kb on - strand, within Atu0288 at 282.796 kb on - strand, within Atu0288 at 282.875 kb on + strand, within Atu0288 at 282.883 kb on - strand, within Atu0288 at 282.883 kb on - strand, within Atu0288 at 282.900 kb on + strand, within Atu0288 at 282.908 kb on - strand, within Atu0288 at 282.910 kb on + strand, within Atu0288 at 282.910 kb on + strand, within Atu0288 at 282.918 kb on - strand, within Atu0288 at 282.961 kb on - strand, within Atu0288 at 282.967 kb on + strand, within Atu0288 at 283.003 kb on - strand, within Atu0288 at 283.003 kb on - strand, within Atu0288 at 283.013 kb on - strand, within Atu0288 at 283.013 kb on - strand, within Atu0288 at 283.117 kb on + strand, within Atu0288 at 283.132 kb on + strand, within Atu0288 at 283.137 kb on + strand, within Atu0288
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 279,630 - Atu0286 0.12 +0.2 279,647 - Atu0286 0.13 +0.0 279,728 + Atu0286 0.20 -1.0 279,753 + Atu0286 0.23 +1.3 279,761 - Atu0286 0.23 -0.7 279,772 + Atu0286 0.24 +0.1 279,772 + Atu0286 0.24 -0.7 279,772 + Atu0286 0.24 -0.2 279,772 + Atu0286 0.24 -0.8 279,772 + Atu0286 0.24 +0.1 279,772 + Atu0286 0.24 -0.7 279,780 - Atu0286 0.25 -1.3 279,780 - Atu0286 0.25 +0.5 279,780 - Atu0286 0.25 -0.7 279,801 + Atu0286 0.27 +0.4 279,821 + Atu0286 0.29 -0.2 279,857 - Atu0286 0.32 -0.2 279,893 + Atu0286 0.35 +0.8 279,893 + Atu0286 0.35 +0.7 279,893 + Atu0286 0.35 -1.8 279,893 + Atu0286 0.35 +0.5 279,893 + Atu0286 0.35 -1.0 279,893 + Atu0286 0.35 +0.1 279,893 + Atu0286 0.35 -0.6 279,901 - Atu0286 0.36 +0.2 279,901 - Atu0286 0.36 -0.8 279,901 - Atu0286 0.36 -0.2 279,911 - Atu0286 0.37 -1.6 279,921 - Atu0286 0.38 +2.7 280,004 - Atu0286 0.45 +0.1 280,142 + Atu0286 0.57 +0.7 280,142 + Atu0286 0.57 -1.2 280,208 + Atu0286 0.63 +0.5 280,230 - Atu0286 0.65 +2.0 280,258 + Atu0286 0.68 -1.8 280,258 + Atu0286 0.68 -0.9 280,266 - Atu0286 0.68 -1.1 280,266 - Atu0286 0.68 -0.5 280,266 - Atu0286 0.68 -0.1 280,332 + Atu0286 0.74 -0.2 280,332 + Atu0286 0.74 +1.7 280,332 + Atu0286 0.74 -0.3 280,332 + Atu0286 0.74 -0.3 280,332 + Atu0286 0.74 -0.3 280,332 + Atu0286 0.74 +0.4 280,340 - Atu0286 0.75 -0.1 280,340 - Atu0286 0.75 -1.5 280,340 - Atu0286 0.75 +0.8 280,415 + Atu0286 0.82 -1.0 280,421 - Atu0286 0.82 +0.2 280,453 - Atu0286 0.85 +1.6 280,461 + Atu0286 0.86 +1.1 280,500 - Atu0286 0.89 -0.6 280,502 + Atu0286 0.89 -0.9 280,507 + +0.7 280,510 - -0.7 280,510 - +0.9 280,515 - -1.2 280,538 - -0.6 280,681 - -0.7 280,734 - -1.0 280,734 - -0.1 280,764 - -1.2 280,777 - Atu0287 0.10 -1.4 280,815 + Atu0287 0.13 +1.5 280,815 + Atu0287 0.13 -0.3 280,875 - Atu0287 0.17 -0.5 280,896 - Atu0287 0.18 -0.4 281,006 + Atu0287 0.25 -0.7 281,147 + Atu0287 0.34 +0.7 281,147 - Atu0287 0.34 -0.3 281,245 + Atu0287 0.41 +0.7 281,305 + Atu0287 0.44 -0.7 281,305 - Atu0287 0.44 +1.0 281,364 - Atu0287 0.48 -3.8 281,385 + Atu0287 0.50 -0.3 281,407 + Atu0287 0.51 -0.6 281,407 + Atu0287 0.51 -0.1 281,409 - Atu0287 0.51 -0.6 281,446 + Atu0287 0.54 -1.2 281,487 + Atu0287 0.56 +0.5 281,492 - Atu0287 0.57 -0.0 281,496 - Atu0287 0.57 -0.3 281,501 - Atu0287 0.57 -0.1 281,702 - Atu0287 0.70 +0.3 281,746 - Atu0287 0.73 +1.0 281,820 - Atu0287 0.78 -1.6 281,829 - Atu0287 0.78 +1.8 281,945 - Atu0287 0.86 +1.0 282,033 + +0.1 282,037 - -1.1 282,079 + -0.1 282,223 - -0.1 282,293 + -1.0 282,293 + -1.0 282,363 - Atu0288 0.13 -1.3 282,436 - Atu0288 0.18 -1.3 282,464 + Atu0288 0.21 -1.0 282,465 - Atu0288 0.21 -0.4 282,583 - Atu0288 0.30 -0.3 282,628 + Atu0288 0.33 +0.7 282,640 + Atu0288 0.34 -0.3 282,646 - Atu0288 0.35 +0.5 282,669 + Atu0288 0.37 -1.2 282,671 + Atu0288 0.37 +0.2 282,671 + Atu0288 0.37 -0.1 282,671 + Atu0288 0.37 -0.4 282,679 - Atu0288 0.37 -1.7 282,679 - Atu0288 0.37 -0.8 282,679 - Atu0288 0.37 +0.1 282,679 - Atu0288 0.37 +0.4 282,702 - Atu0288 0.39 -0.6 282,727 + Atu0288 0.41 -1.8 282,746 + Atu0288 0.43 -1.2 282,754 - Atu0288 0.43 -0.5 282,773 + Atu0288 0.45 -0.9 282,774 - Atu0288 0.45 +1.0 282,774 - Atu0288 0.45 -1.8 282,781 - Atu0288 0.45 +1.7 282,796 - Atu0288 0.46 -0.8 282,875 + Atu0288 0.53 -1.4 282,883 - Atu0288 0.53 -0.9 282,883 - Atu0288 0.53 -0.4 282,900 + Atu0288 0.55 -1.4 282,908 - Atu0288 0.55 -0.9 282,910 + Atu0288 0.55 +0.2 282,910 + Atu0288 0.55 -1.7 282,918 - Atu0288 0.56 -1.4 282,961 - Atu0288 0.59 -2.3 282,967 + Atu0288 0.60 +0.3 283,003 - Atu0288 0.63 +0.2 283,003 - Atu0288 0.63 -0.4 283,013 - Atu0288 0.63 -0.6 283,013 - Atu0288 0.63 -1.1 283,117 + Atu0288 0.72 -0.8 283,132 + Atu0288 0.73 -0.3 283,137 + Atu0288 0.73 -3.0
Or see this region's nucleotide sequence