Strain Fitness in Pseudomonas simiae WCS417 around PS417_28450

Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28445 and PS417_28450 are separated by 10 nucleotidesPS417_28450 and PS417_28455 are separated by 228 nucleotides PS417_28445: PS417_28445 - glucosamine--fructose-6-phosphate aminotransferase, at 6,144,340 to 6,146,172 _28445 PS417_28450: PS417_28450 - XRE family transcriptional regulator, at 6,146,183 to 6,146,950 _28450 PS417_28455: PS417_28455 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 6,147,179 to 6,148,546 _28455 Position (kb) 6146 6147Strain fitness (log2 ratio) -1 0 1 2at 6146.185 kb on - strandat 6146.461 kb on - strand, within PS417_28450at 6146.538 kb on - strand, within PS417_28450at 6146.722 kb on - strand, within PS417_28450at 6146.722 kb on - strand, within PS417_28450at 6147.036 kb on + strandat 6147.150 kb on + strandat 6147.150 kb on + strandat 6147.150 kb on + strandat 6147.154 kb on + strandat 6147.154 kb on + strandat 6147.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM
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6,146,185 - +0.3
6,146,461 - PS417_28450 0.36 +0.6
6,146,538 - PS417_28450 0.46 +0.4
6,146,722 - PS417_28450 0.70 +1.8
6,146,722 - PS417_28450 0.70 +1.8
6,147,036 + -1.2
6,147,150 + -1.7
6,147,150 + +0.5
6,147,150 + -0.3
6,147,154 + -0.5
6,147,154 + +0.7
6,147,155 - -0.6

Or see this region's nucleotide sequence