Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24820 and PS417_24825 overlap by 4 nucleotides PS417_24825 and PS417_24830 are separated by 92 nucleotides PS417_24830 and PS417_24835 are separated by 305 nucleotides
PS417_24820: PS417_24820 - ethanolamine ammonia-lyase, at 5,383,980 to 5,385,374
_24820
PS417_24825: PS417_24825 - ethanolamine ammonia-lyase, at 5,385,371 to 5,386,204
_24825
PS417_24830: PS417_24830 - GNAT family acetyltransferase, at 5,386,297 to 5,386,755
_24830
PS417_24835: PS417_24835 - hypothetical protein, at 5,387,061 to 5,387,717
_24835
Position (kb) 5385
5386
5387 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5384.480 kb on + strand, within PS417_24820 at 5384.698 kb on + strand, within PS417_24820 at 5384.838 kb on + strand, within PS417_24820 at 5384.839 kb on - strand, within PS417_24820 at 5384.957 kb on + strand, within PS417_24820 at 5384.958 kb on - strand, within PS417_24820 at 5384.973 kb on - strand, within PS417_24820 at 5384.991 kb on + strand, within PS417_24820 at 5384.992 kb on - strand, within PS417_24820 at 5385.046 kb on + strand, within PS417_24820 at 5385.046 kb on + strand, within PS417_24820 at 5385.047 kb on - strand, within PS417_24820 at 5385.047 kb on - strand, within PS417_24820 at 5385.078 kb on + strand, within PS417_24820 at 5385.079 kb on - strand, within PS417_24820 at 5385.185 kb on + strand, within PS417_24820 at 5385.185 kb on + strand, within PS417_24820 at 5385.185 kb on + strand, within PS417_24820 at 5385.186 kb on - strand, within PS417_24820 at 5385.186 kb on - strand, within PS417_24820 at 5385.195 kb on + strand, within PS417_24820 at 5385.195 kb on + strand, within PS417_24820 at 5385.195 kb on + strand, within PS417_24820 at 5385.630 kb on - strand, within PS417_24825 at 5385.732 kb on + strand, within PS417_24825 at 5385.766 kb on + strand, within PS417_24825 at 5385.962 kb on + strand, within PS417_24825 at 5385.962 kb on + strand, within PS417_24825 at 5385.963 kb on - strand, within PS417_24825 at 5385.972 kb on - strand, within PS417_24825 at 5385.972 kb on - strand, within PS417_24825 at 5385.972 kb on - strand, within PS417_24825 at 5385.972 kb on - strand, within PS417_24825 at 5386.023 kb on + strand, within PS417_24825 at 5386.043 kb on + strand, within PS417_24825 at 5386.043 kb on + strand, within PS417_24825 at 5386.070 kb on + strand, within PS417_24825 at 5386.236 kb on - strand at 5386.271 kb on - strand at 5386.499 kb on - strand, within PS417_24830 at 5386.552 kb on + strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.662 kb on + strand, within PS417_24830 at 5386.663 kb on - strand, within PS417_24830 at 5386.688 kb on - strand, within PS417_24830 at 5386.729 kb on + strand at 5386.730 kb on - strand at 5386.887 kb on + strand at 5386.887 kb on + strand at 5386.887 kb on + strand at 5386.888 kb on - strand at 5386.954 kb on - strand at 5386.975 kb on + strand at 5386.990 kb on - strand at 5386.990 kb on - strand at 5386.990 kb on - strand at 5386.990 kb on - strand at 5386.998 kb on - strand at 5387.103 kb on + strand at 5387.120 kb on - strand at 5387.127 kb on + strand, within PS417_24835 at 5387.143 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM remove 5,384,480 + PS417_24820 0.36 +0.1 5,384,698 + PS417_24820 0.51 +1.0 5,384,838 + PS417_24820 0.62 +2.0 5,384,839 - PS417_24820 0.62 +0.1 5,384,957 + PS417_24820 0.70 -0.2 5,384,958 - PS417_24820 0.70 -2.2 5,384,973 - PS417_24820 0.71 -0.2 5,384,991 + PS417_24820 0.72 +0.5 5,384,992 - PS417_24820 0.73 +0.4 5,385,046 + PS417_24820 0.76 +1.3 5,385,046 + PS417_24820 0.76 -0.1 5,385,047 - PS417_24820 0.76 +0.8 5,385,047 - PS417_24820 0.76 +0.8 5,385,078 + PS417_24820 0.79 -0.4 5,385,079 - PS417_24820 0.79 -0.6 5,385,185 + PS417_24820 0.86 -0.8 5,385,185 + PS417_24820 0.86 +0.0 5,385,185 + PS417_24820 0.86 -1.8 5,385,186 - PS417_24820 0.86 +1.3 5,385,186 - PS417_24820 0.86 -0.0 5,385,195 + PS417_24820 0.87 +0.9 5,385,195 + PS417_24820 0.87 -0.8 5,385,195 + PS417_24820 0.87 +0.6 5,385,630 - PS417_24825 0.31 -0.6 5,385,732 + PS417_24825 0.43 -1.2 5,385,766 + PS417_24825 0.47 +0.7 5,385,962 + PS417_24825 0.71 +0.4 5,385,962 + PS417_24825 0.71 +0.8 5,385,963 - PS417_24825 0.71 -0.3 5,385,972 - PS417_24825 0.72 -1.0 5,385,972 - PS417_24825 0.72 -0.8 5,385,972 - PS417_24825 0.72 -0.5 5,385,972 - PS417_24825 0.72 -0.1 5,386,023 + PS417_24825 0.78 -0.9 5,386,043 + PS417_24825 0.81 -0.1 5,386,043 + PS417_24825 0.81 -0.6 5,386,070 + PS417_24825 0.84 -0.8 5,386,236 - +0.0 5,386,271 - +1.1 5,386,499 - PS417_24830 0.44 +0.1 5,386,552 + PS417_24830 0.56 -0.3 5,386,553 - PS417_24830 0.56 -1.0 5,386,553 - PS417_24830 0.56 -0.1 5,386,553 - PS417_24830 0.56 +0.3 5,386,553 - PS417_24830 0.56 +2.0 5,386,553 - PS417_24830 0.56 -0.3 5,386,553 - PS417_24830 0.56 -0.2 5,386,662 + PS417_24830 0.80 +1.4 5,386,663 - PS417_24830 0.80 +1.3 5,386,688 - PS417_24830 0.85 +0.3 5,386,729 + -0.3 5,386,730 - +0.7 5,386,887 + -1.8 5,386,887 + -0.2 5,386,887 + -0.6 5,386,888 - +0.2 5,386,954 - -0.2 5,386,975 + -0.5 5,386,990 - +0.9 5,386,990 - -0.1 5,386,990 - +0.3 5,386,990 - +0.4 5,386,998 - +0.7 5,387,103 + -0.2 5,387,120 - -0.6 5,387,127 + PS417_24835 0.10 -0.7 5,387,143 - +2.0
Or see this region's nucleotide sequence