Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2543

Experiment: LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2542 and GFF2543 are separated by 328 nucleotidesGFF2543 and GFF2544 are separated by 269 nucleotides GFF2542 - putative transposase, at 54,852 to 55,214 GFF2542 GFF2543 - FIG01045496: hypothetical protein, at 55,543 to 55,752 GFF2543 GFF2544 - putative coiled-coil protein, at 56,022 to 57,488 GFF2544 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1at 54.730 kb on + strandat 54.743 kb on + strandat 55.250 kb on + strandat 55.366 kb on - strandat 55.545 kb on - strandat 55.598 kb on + strand, within GFF2543at 55.599 kb on - strand, within GFF2543

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI
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54,730 + -0.4
54,743 + +0.2
55,250 + -0.4
55,366 - -1.5
55,545 - +0.4
55,598 + GFF2543 0.26 +0.0
55,599 - GFF2543 0.27 -2.5

Or see this region's nucleotide sequence