Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2414

Experiment: LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2413 and GFF2414 are separated by 291 nucleotidesGFF2414 and GFF2415 are separated by 206 nucleotidesGFF2415 and GFF2416 are separated by 120 nucleotides GFF2413 - FIG021952: putative membrane protein, at 25,885 to 26,889 GFF2413 GFF2414 - Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-), at 27,181 to 28,347 GFF2414 GFF2415 - Nucleoside diphosphate kinase (EC 2.7.4.6), at 28,554 to 28,985 GFF2415 GFF2416 - Putative polyferredoxin, at 29,106 to 29,969 GFF2416 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1at 26.907 kb on - strandat 26.977 kb on - strandat 26.995 kb on + strandat 26.995 kb on + strandat 26.996 kb on - strandat 26.996 kb on - strandat 26.996 kb on - strandat 26.996 kb on - strandat 27.057 kb on + strandat 27.060 kb on - strandat 27.060 kb on - strandat 27.064 kb on - strandat 27.128 kb on - strandat 27.128 kb on - strandat 27.152 kb on - strandat 27.180 kb on - strandat 27.187 kb on - strandat 27.216 kb on + strandat 27.241 kb on - strandat 27.308 kb on - strand, within GFF2414at 27.418 kb on - strand, within GFF2414at 27.423 kb on + strand, within GFF2414at 27.423 kb on + strand, within GFF2414at 27.424 kb on - strand, within GFF2414at 27.501 kb on - strand, within GFF2414at 27.501 kb on - strand, within GFF2414at 27.501 kb on - strand, within GFF2414at 27.582 kb on - strand, within GFF2414at 27.634 kb on + strand, within GFF2414at 27.634 kb on + strand, within GFF2414at 27.634 kb on + strand, within GFF2414at 27.634 kb on + strand, within GFF2414at 27.635 kb on - strand, within GFF2414at 27.635 kb on - strand, within GFF2414at 27.658 kb on + strand, within GFF2414at 27.658 kb on + strand, within GFF2414at 27.788 kb on - strand, within GFF2414at 28.014 kb on - strand, within GFF2414at 28.124 kb on - strand, within GFF2414at 28.188 kb on - strand, within GFF2414at 28.188 kb on - strand, within GFF2414at 28.347 kb on + strandat 28.347 kb on + strandat 28.347 kb on + strandat 28.347 kb on + strandat 28.348 kb on - strandat 28.370 kb on - strandat 28.376 kb on + strandat 28.419 kb on + strandat 28.461 kb on - strandat 28.511 kb on + strandat 28.658 kb on + strand, within GFF2415at 28.659 kb on - strand, within GFF2415at 28.659 kb on - strand, within GFF2415at 28.659 kb on - strand, within GFF2415at 28.773 kb on - strand, within GFF2415at 28.834 kb on + strand, within GFF2415at 28.834 kb on + strand, within GFF2415at 28.990 kb on - strandat 29.031 kb on + strandat 29.094 kb on + strandat 29.094 kb on + strandat 29.207 kb on + strand, within GFF2416at 29.208 kb on - strand, within GFF2416at 29.217 kb on - strand, within GFF2416at 29.220 kb on - strand, within GFF2416

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI
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26,907 - +0.7
26,977 - +0.7
26,995 + +0.1
26,995 + +0.1
26,996 - +0.2
26,996 - +0.3
26,996 - -0.8
26,996 - +0.5
27,057 + +0.1
27,060 - +0.2
27,060 - -0.1
27,064 - +0.1
27,128 - -0.1
27,128 - +0.6
27,152 - +1.5
27,180 - -0.3
27,187 - +0.1
27,216 + +1.3
27,241 - +0.4
27,308 - GFF2414 0.11 +0.8
27,418 - GFF2414 0.20 +0.7
27,423 + GFF2414 0.21 +0.5
27,423 + GFF2414 0.21 -0.6
27,424 - GFF2414 0.21 +0.1
27,501 - GFF2414 0.27 +0.8
27,501 - GFF2414 0.27 -1.1
27,501 - GFF2414 0.27 +0.4
27,582 - GFF2414 0.34 -0.2
27,634 + GFF2414 0.39 +0.2
27,634 + GFF2414 0.39 +0.2
27,634 + GFF2414 0.39 +0.2
27,634 + GFF2414 0.39 +0.3
27,635 - GFF2414 0.39 +0.5
27,635 - GFF2414 0.39 +1.1
27,658 + GFF2414 0.41 +0.1
27,658 + GFF2414 0.41 +0.9
27,788 - GFF2414 0.52 +0.3
28,014 - GFF2414 0.71 +0.4
28,124 - GFF2414 0.81 +0.1
28,188 - GFF2414 0.86 +0.3
28,188 - GFF2414 0.86 -0.1
28,347 + +0.1
28,347 + -0.2
28,347 + +1.4
28,347 + +1.2
28,348 - +0.5
28,370 - +0.3
28,376 + +0.2
28,419 + -0.1
28,461 - -0.6
28,511 + +0.2
28,658 + GFF2415 0.24 -0.3
28,659 - GFF2415 0.24 -1.5
28,659 - GFF2415 0.24 -1.5
28,659 - GFF2415 0.24 -1.5
28,773 - GFF2415 0.51 -1.9
28,834 + GFF2415 0.65 -1.3
28,834 + GFF2415 0.65 -1.0
28,990 - -0.2
29,031 + +0.3
29,094 + +0.2
29,094 + +0.3
29,207 + GFF2416 0.12 -2.1
29,208 - GFF2416 0.12 -0.5
29,217 - GFF2416 0.13 +1.2
29,220 - GFF2416 0.13 -1.1

Or see this region's nucleotide sequence