Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1407

Experiment: LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1406 and GFF1407 are separated by 163 nucleotidesGFF1407 and GFF1408 are separated by 180 nucleotidesGFF1408 and GFF1409 are separated by 13 nucleotides GFF1406 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 52,209 to 53,567 GFF1406 GFF1407 - Maltose operon periplasmic protein MalM, at 53,731 to 54,648 GFF1407 GFF1408 - Chorismate--pyruvate lyase (EC 4.1.3.40), at 54,829 to 55,326 GFF1408 GFF1409 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 55,340 to 56,212 GFF1409 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 52.740 kb on + strand, within GFF1406at 52.760 kb on + strand, within GFF1406at 52.764 kb on + strand, within GFF1406at 52.804 kb on + strand, within GFF1406at 52.889 kb on + strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.890 kb on - strand, within GFF1406at 52.983 kb on + strand, within GFF1406at 52.983 kb on + strand, within GFF1406at 52.984 kb on - strand, within GFF1406at 53.013 kb on - strand, within GFF1406at 53.117 kb on + strand, within GFF1406at 53.118 kb on - strand, within GFF1406at 53.127 kb on - strand, within GFF1406at 53.160 kb on - strand, within GFF1406at 53.160 kb on - strand, within GFF1406at 53.175 kb on + strand, within GFF1406at 53.175 kb on + strand, within GFF1406at 53.183 kb on + strand, within GFF1406at 53.187 kb on + strand, within GFF1406at 53.187 kb on + strand, within GFF1406at 53.210 kb on + strand, within GFF1406at 53.210 kb on + strand, within GFF1406at 53.242 kb on + strand, within GFF1406at 53.342 kb on + strand, within GFF1406at 53.342 kb on + strand, within GFF1406at 53.405 kb on + strand, within GFF1406at 53.445 kb on + strandat 53.445 kb on + strandat 53.566 kb on - strandat 53.568 kb on + strandat 53.818 kb on + strandat 53.818 kb on + strandat 53.819 kb on - strandat 53.819 kb on - strandat 53.819 kb on - strandat 53.958 kb on + strand, within GFF1407at 53.977 kb on + strand, within GFF1407at 53.978 kb on - strand, within GFF1407at 54.217 kb on - strand, within GFF1407at 54.246 kb on + strand, within GFF1407at 54.246 kb on + strand, within GFF1407at 54.271 kb on + strand, within GFF1407at 54.289 kb on - strand, within GFF1407at 54.516 kb on + strand, within GFF1407at 54.650 kb on + strandat 54.651 kb on - strandat 54.755 kb on + strandat 54.793 kb on + strandat 54.804 kb on + strandat 54.845 kb on + strandat 54.869 kb on - strandat 55.028 kb on + strand, within GFF1408at 55.048 kb on + strand, within GFF1408at 55.056 kb on - strand, within GFF1408at 55.065 kb on - strand, within GFF1408at 55.184 kb on + strand, within GFF1408at 55.184 kb on + strand, within GFF1408at 55.185 kb on - strand, within GFF1408at 55.185 kb on - strand, within GFF1408at 55.185 kb on - strand, within GFF1408at 55.185 kb on - strand, within GFF1408at 55.188 kb on + strand, within GFF1408at 55.189 kb on - strand, within GFF1408at 55.189 kb on - strand, within GFF1408at 55.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI
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52,740 + GFF1406 0.39 -0.1
52,760 + GFF1406 0.41 -0.6
52,764 + GFF1406 0.41 +0.5
52,804 + GFF1406 0.44 +0.4
52,889 + GFF1406 0.50 +0.0
52,890 - GFF1406 0.50 -0.1
52,890 - GFF1406 0.50 +0.5
52,890 - GFF1406 0.50 -0.1
52,890 - GFF1406 0.50 -0.3
52,890 - GFF1406 0.50 +0.7
52,983 + GFF1406 0.57 -0.3
52,983 + GFF1406 0.57 -1.0
52,984 - GFF1406 0.57 +1.6
53,013 - GFF1406 0.59 -0.4
53,117 + GFF1406 0.67 -0.5
53,118 - GFF1406 0.67 +0.2
53,127 - GFF1406 0.68 +0.1
53,160 - GFF1406 0.70 -0.1
53,160 - GFF1406 0.70 -0.2
53,175 + GFF1406 0.71 +0.3
53,175 + GFF1406 0.71 -0.8
53,183 + GFF1406 0.72 +0.4
53,187 + GFF1406 0.72 +0.3
53,187 + GFF1406 0.72 +0.8
53,210 + GFF1406 0.74 +0.5
53,210 + GFF1406 0.74 +0.3
53,242 + GFF1406 0.76 -0.4
53,342 + GFF1406 0.83 +0.4
53,342 + GFF1406 0.83 -0.9
53,405 + GFF1406 0.88 -1.3
53,445 + -0.7
53,445 + +2.0
53,566 - -1.2
53,568 + +0.3
53,818 + -0.2
53,818 + +0.0
53,819 - +1.2
53,819 - +1.0
53,819 - -0.4
53,958 + GFF1407 0.25 +0.2
53,977 + GFF1407 0.27 +0.2
53,978 - GFF1407 0.27 +1.0
54,217 - GFF1407 0.53 +0.2
54,246 + GFF1407 0.56 -0.2
54,246 + GFF1407 0.56 -0.0
54,271 + GFF1407 0.59 +1.4
54,289 - GFF1407 0.61 +0.2
54,516 + GFF1407 0.86 +0.4
54,650 + +0.6
54,651 - +0.4
54,755 + -0.5
54,793 + +0.6
54,804 + +0.0
54,845 + -0.5
54,869 - -0.1
55,028 + GFF1408 0.40 +0.7
55,048 + GFF1408 0.44 +0.1
55,056 - GFF1408 0.46 +0.3
55,065 - GFF1408 0.47 -0.6
55,184 + GFF1408 0.71 +0.1
55,184 + GFF1408 0.71 +1.4
55,185 - GFF1408 0.71 -0.5
55,185 - GFF1408 0.71 -0.6
55,185 - GFF1408 0.71 -0.6
55,185 - GFF1408 0.71 -1.3
55,188 + GFF1408 0.72 +0.4
55,189 - GFF1408 0.72 +0.5
55,189 - GFF1408 0.72 -0.1
55,322 - -2.6

Or see this region's nucleotide sequence