Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1206

Experiment: LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1202 and GFF1203 overlap by 11 nucleotidesGFF1203 and GFF1204 are separated by 43 nucleotidesGFF1204 and GFF1205 overlap by 35 nucleotidesGFF1205 and GFF1206 overlap by 22 nucleotidesGFF1206 and GFF1207 overlap by 16 nucleotidesGFF1207 and GFF1208 are separated by 361 nucleotidesGFF1208 and GFF1209 are separated by 10 nucleotides GFF1202 - hypothetical protein, at 46,758 to 46,904 GFF1202 GFF1203 - Thiol:disulfide interchange protein dsbA precursor, at 46,894 to 47,547 GFF1203 GFF1204 - hypothetical protein, at 47,591 to 47,704 GFF1204 GFF1205 - hypothetical protein, at 47,670 to 47,813 GFF1205 GFF1206 - Putative GerE-family regulatory protein, at 47,792 to 48,142 GFF1206 GFF1207 - Probable regulatory protein, at 48,127 to 48,285 GFF1207 GFF1208 - hypothetical protein, at 48,647 to 48,760 GFF1208 GFF1209 - putative outer membrane protein, at 48,771 to 49,658 GFF1209 Position (kb) 47 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1at 46.878 kb on + strand, within GFF1202at 47.001 kb on - strand, within GFF1203at 47.015 kb on + strand, within GFF1203at 47.016 kb on - strand, within GFF1203at 47.016 kb on - strand, within GFF1203at 47.043 kb on - strand, within GFF1203at 47.043 kb on - strand, within GFF1203at 47.065 kb on + strand, within GFF1203at 47.065 kb on + strand, within GFF1203at 47.099 kb on - strand, within GFF1203at 47.099 kb on - strand, within GFF1203at 47.099 kb on - strand, within GFF1203at 47.100 kb on + strand, within GFF1203at 47.101 kb on - strand, within GFF1203at 47.142 kb on + strand, within GFF1203at 47.300 kb on + strand, within GFF1203at 47.301 kb on - strand, within GFF1203at 47.301 kb on - strand, within GFF1203at 47.330 kb on - strand, within GFF1203at 47.574 kb on - strandat 47.574 kb on - strandat 47.726 kb on + strand, within GFF1205at 47.860 kb on - strand, within GFF1206at 48.001 kb on + strand, within GFF1206at 48.065 kb on - strand, within GFF1206at 48.088 kb on - strand, within GFF1206at 48.092 kb on + strand, within GFF1206at 48.142 kb on + strandat 48.210 kb on - strand, within GFF1207at 48.229 kb on - strand, within GFF1207at 48.229 kb on - strand, within GFF1207at 48.229 kb on - strand, within GFF1207at 48.439 kb on - strandat 48.521 kb on + strandat 48.587 kb on - strandat 48.598 kb on - strandat 48.629 kb on + strandat 48.645 kb on + strandat 48.666 kb on + strand, within GFF1208at 48.689 kb on + strand, within GFF1208at 48.731 kb on + strand, within GFF1208at 48.765 kb on + strandat 48.790 kb on - strandat 48.812 kb on + strandat 48.813 kb on - strandat 48.825 kb on + strandat 48.852 kb on - strandat 48.948 kb on + strand, within GFF1209at 48.978 kb on - strand, within GFF1209at 48.984 kb on + strand, within GFF1209at 48.985 kb on - strand, within GFF1209at 48.988 kb on - strand, within GFF1209at 49.012 kb on - strand, within GFF1209at 49.012 kb on - strand, within GFF1209at 49.053 kb on - strand, within GFF1209at 49.055 kb on + strand, within GFF1209at 49.068 kb on - strand, within GFF1209at 49.095 kb on + strand, within GFF1209at 49.095 kb on + strand, within GFF1209at 49.095 kb on + strand, within GFF1209at 49.096 kb on - strand, within GFF1209at 49.096 kb on - strand, within GFF1209at 49.112 kb on + strand, within GFF1209at 49.114 kb on + strand, within GFF1209

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI
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46,878 + GFF1202 0.82 +0.6
47,001 - GFF1203 0.16 -0.2
47,015 + GFF1203 0.19 -0.0
47,016 - GFF1203 0.19 +0.4
47,016 - GFF1203 0.19 +0.4
47,043 - GFF1203 0.23 +0.1
47,043 - GFF1203 0.23 +0.9
47,065 + GFF1203 0.26 -0.0
47,065 + GFF1203 0.26 +0.3
47,099 - GFF1203 0.31 -0.1
47,099 - GFF1203 0.31 +0.4
47,099 - GFF1203 0.31 +0.3
47,100 + GFF1203 0.31 -0.1
47,101 - GFF1203 0.32 +0.1
47,142 + GFF1203 0.38 -1.0
47,300 + GFF1203 0.62 -0.7
47,301 - GFF1203 0.62 +0.2
47,301 - GFF1203 0.62 +0.0
47,330 - GFF1203 0.67 +0.2
47,574 - -0.5
47,574 - +0.1
47,726 + GFF1205 0.39 +0.3
47,860 - GFF1206 0.19 -0.6
48,001 + GFF1206 0.60 -0.3
48,065 - GFF1206 0.78 -1.0
48,088 - GFF1206 0.84 -0.8
48,092 + GFF1206 0.85 -1.1
48,142 + -0.4
48,210 - GFF1207 0.52 +0.7
48,229 - GFF1207 0.64 +0.1
48,229 - GFF1207 0.64 -0.5
48,229 - GFF1207 0.64 +0.0
48,439 - -1.1
48,521 + -0.3
48,587 - +0.3
48,598 - +0.2
48,629 + +0.1
48,645 + -0.9
48,666 + GFF1208 0.17 +0.1
48,689 + GFF1208 0.37 -0.2
48,731 + GFF1208 0.74 -0.3
48,765 + +0.7
48,790 - -0.3
48,812 + +0.2
48,813 - -0.2
48,825 + -0.1
48,852 - +0.1
48,948 + GFF1209 0.20 +0.4
48,978 - GFF1209 0.23 -1.7
48,984 + GFF1209 0.24 +0.9
48,985 - GFF1209 0.24 +0.1
48,988 - GFF1209 0.24 -3.1
49,012 - GFF1209 0.27 +0.4
49,012 - GFF1209 0.27 -0.3
49,053 - GFF1209 0.32 +0.2
49,055 + GFF1209 0.32 +0.0
49,068 - GFF1209 0.33 +0.3
49,095 + GFF1209 0.36 +0.4
49,095 + GFF1209 0.36 -0.3
49,095 + GFF1209 0.36 +0.0
49,096 - GFF1209 0.37 -0.6
49,096 - GFF1209 0.37 -0.6
49,112 + GFF1209 0.38 -0.2
49,114 + GFF1209 0.39 +0.4

Or see this region's nucleotide sequence