Strain Fitness in Pseudomonas simiae WCS417 around PS417_05970

Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05960 and PS417_05965 overlap by 1 nucleotidesPS417_05965 and PS417_05970 overlap by 4 nucleotidesPS417_05970 and PS417_05975 overlap by 4 nucleotidesPS417_05975 and PS417_05980 overlap by 4 nucleotides PS417_05960: PS417_05960 - chemotaxis protein, at 1,325,104 to 1,326,726 _05960 PS417_05965: PS417_05965 - chemotaxis protein CheW, at 1,326,726 to 1,327,238 _05965 PS417_05970: PS417_05970 - chemotaxis protein CheR, at 1,327,235 to 1,328,494 _05970 PS417_05975: PS417_05975 - chemotaxis protein CheW, at 1,328,491 to 1,329,192 _05975 PS417_05980: PS417_05980 - chemotaxis protein CheA, at 1,329,189 to 1,331,453 _05980 Position (kb) 1327 1328 1329Strain fitness (log2 ratio) -2 -1 0 1 2at 1326.373 kb on + strand, within PS417_05960at 1326.374 kb on - strand, within PS417_05960at 1326.574 kb on - strandat 1327.003 kb on - strand, within PS417_05965at 1327.003 kb on - strand, within PS417_05965at 1327.125 kb on + strand, within PS417_05965at 1327.235 kb on - strandat 1327.235 kb on - strandat 1327.371 kb on - strand, within PS417_05970at 1327.569 kb on - strand, within PS417_05970at 1327.676 kb on + strand, within PS417_05970at 1327.677 kb on - strand, within PS417_05970at 1327.736 kb on + strand, within PS417_05970at 1327.736 kb on + strand, within PS417_05970at 1327.835 kb on + strand, within PS417_05970at 1327.836 kb on - strand, within PS417_05970at 1327.868 kb on + strand, within PS417_05970at 1327.869 kb on - strand, within PS417_05970at 1328.249 kb on + strand, within PS417_05970at 1328.250 kb on - strand, within PS417_05970at 1328.250 kb on - strand, within PS417_05970at 1328.250 kb on - strand, within PS417_05970at 1328.326 kb on - strand, within PS417_05970at 1328.326 kb on - strand, within PS417_05970at 1328.339 kb on + strand, within PS417_05970at 1328.340 kb on - strand, within PS417_05970at 1328.496 kb on + strandat 1328.497 kb on - strandat 1329.101 kb on - strand, within PS417_05975at 1329.263 kb on - strandat 1329.441 kb on + strand, within PS417_05980at 1329.458 kb on + strand, within PS417_05980at 1329.458 kb on + strand, within PS417_05980at 1329.459 kb on - strand, within PS417_05980

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM
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1,326,373 + PS417_05960 0.78 -2.0
1,326,374 - PS417_05960 0.78 +0.9
1,326,574 - +0.5
1,327,003 - PS417_05965 0.54 +0.4
1,327,003 - PS417_05965 0.54 +0.6
1,327,125 + PS417_05965 0.78 +0.3
1,327,235 - +0.6
1,327,235 - +0.4
1,327,371 - PS417_05970 0.11 +0.4
1,327,569 - PS417_05970 0.27 +0.8
1,327,676 + PS417_05970 0.35 +0.4
1,327,677 - PS417_05970 0.35 +2.6
1,327,736 + PS417_05970 0.40 +0.3
1,327,736 + PS417_05970 0.40 +0.4
1,327,835 + PS417_05970 0.48 +0.2
1,327,836 - PS417_05970 0.48 +0.8
1,327,868 + PS417_05970 0.50 +1.2
1,327,869 - PS417_05970 0.50 +1.3
1,328,249 + PS417_05970 0.80 +0.9
1,328,250 - PS417_05970 0.81 -0.1
1,328,250 - PS417_05970 0.81 -0.6
1,328,250 - PS417_05970 0.81 +2.6
1,328,326 - PS417_05970 0.87 +0.9
1,328,326 - PS417_05970 0.87 +0.5
1,328,339 + PS417_05970 0.88 +0.2
1,328,340 - PS417_05970 0.88 +0.4
1,328,496 + +1.2
1,328,497 - -0.1
1,329,101 - PS417_05975 0.87 -1.4
1,329,263 - +1.1
1,329,441 + PS417_05980 0.11 +0.8
1,329,458 + PS417_05980 0.12 +1.1
1,329,458 + PS417_05980 0.12 +0.3
1,329,459 - PS417_05980 0.12 -0.2

Or see this region's nucleotide sequence