Strain Fitness in Escherichia coli BW25113 around b2721
Experiment: octane 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octane 5 vol% |
---|---|---|---|---|---|
remove | |||||
2,841,821 | - | hycG | b2719 | 0.46 | +1.1 |
2,841,861 | - | hycG | b2719 | 0.52 | +0.2 |
2,841,870 | - | hycG | b2719 | 0.53 | +0.9 |
2,842,019 | + | hycG | b2719 | 0.72 | +0.4 |
2,842,047 | - | hycG | b2719 | 0.76 | +0.3 |
2,842,093 | - | hycG | b2719 | 0.82 | +0.8 |
2,842,093 | - | hycG | b2719 | 0.82 | +0.3 |
2,842,113 | + | hycG | b2719 | 0.84 | +0.9 |
2,842,245 | + | -0.1 | |||
2,842,253 | - | +0.9 | |||
2,842,346 | + | hycF | b2720 | 0.21 | +0.2 |
2,842,367 | - | hycF | b2720 | 0.25 | +0.9 |
2,842,377 | + | hycF | b2720 | 0.27 | -0.2 |
2,842,384 | - | hycF | b2720 | 0.28 | -0.2 |
2,842,490 | + | hycF | b2720 | 0.48 | +0.1 |
2,842,523 | - | hycF | b2720 | 0.54 | +0.9 |
2,842,523 | - | hycF | b2720 | 0.54 | +0.2 |
2,842,545 | + | hycF | b2720 | 0.58 | +0.3 |
2,842,584 | + | hycF | b2720 | 0.65 | +0.2 |
2,842,584 | + | hycF | b2720 | 0.65 | +0.6 |
2,842,584 | + | hycF | b2720 | 0.65 | +0.6 |
2,842,599 | + | hycF | b2720 | 0.68 | +0.4 |
2,842,773 | - | -0.3 | |||
2,842,853 | - | +0.3 | |||
2,842,890 | + | +0.3 | |||
2,842,890 | + | -0.2 | |||
2,842,890 | + | +0.3 | |||
2,843,106 | - | hycE | b2721 | 0.19 | -0.7 |
2,843,139 | + | hycE | b2721 | 0.21 | +0.6 |
2,843,144 | + | hycE | b2721 | 0.21 | -0.7 |
2,843,147 | - | hycE | b2721 | 0.21 | -0.7 |
2,843,254 | + | hycE | b2721 | 0.27 | +1.0 |
2,843,407 | - | hycE | b2721 | 0.36 | +0.5 |
2,843,459 | + | hycE | b2721 | 0.39 | +0.4 |
2,843,564 | + | hycE | b2721 | 0.46 | +0.1 |
2,843,572 | - | hycE | b2721 | 0.46 | -0.1 |
2,843,600 | + | hycE | b2721 | 0.48 | +0.2 |
2,843,600 | + | hycE | b2721 | 0.48 | +0.5 |
2,843,626 | + | hycE | b2721 | 0.49 | +0.3 |
2,843,631 | + | hycE | b2721 | 0.50 | -0.3 |
2,843,663 | + | hycE | b2721 | 0.51 | +0.2 |
2,843,674 | - | hycE | b2721 | 0.52 | -0.6 |
2,843,704 | + | hycE | b2721 | 0.54 | +1.0 |
2,843,704 | + | hycE | b2721 | 0.54 | -0.3 |
2,843,731 | - | hycE | b2721 | 0.55 | +0.1 |
2,843,753 | - | hycE | b2721 | 0.57 | +0.9 |
2,843,753 | - | hycE | b2721 | 0.57 | +0.5 |
2,843,765 | + | hycE | b2721 | 0.57 | +0.1 |
2,843,952 | + | hycE | b2721 | 0.68 | +0.1 |
2,844,142 | + | hycE | b2721 | 0.79 | -0.2 |
2,844,231 | + | hycE | b2721 | 0.85 | -0.2 |
2,844,284 | - | hycE | b2721 | 0.88 | -0.2 |
2,844,422 | + | -0.3 | |||
2,844,422 | + | -0.9 | |||
2,844,443 | - | +0.6 | |||
2,844,462 | + | -0.4 | |||
2,844,470 | - | +0.0 | |||
2,844,470 | - | -0.4 | |||
2,844,569 | - | +0.0 | |||
2,844,576 | + | +0.1 | |||
2,844,607 | - | hycD | b2722 | 0.10 | -1.3 |
2,844,761 | - | hycD | b2722 | 0.27 | +0.2 |
2,844,789 | - | hycD | b2722 | 0.30 | -0.7 |
2,844,937 | + | hycD | b2722 | 0.46 | +0.5 |
2,844,945 | - | hycD | b2722 | 0.47 | -0.2 |
2,844,945 | - | hycD | b2722 | 0.47 | -0.2 |
2,844,984 | + | hycD | b2722 | 0.51 | +0.4 |
2,845,140 | - | hycD | b2722 | 0.68 | +0.5 |
2,845,212 | - | hycD | b2722 | 0.76 | -0.8 |
2,845,231 | - | hycD | b2722 | 0.78 | +0.1 |
2,845,269 | - | hycD | b2722 | 0.82 | -0.0 |
2,845,320 | + | hycD | b2722 | 0.88 | +0.2 |
2,845,428 | - | +0.4 | |||
2,845,428 | - | -1.3 | |||
2,845,487 | + | -0.1 |
Or see this region's nucleotide sequence