Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4767

Experiment: LB_plus_SM_buffer with phi19h1_phage 0.01875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4767 and GFF4768 are separated by 763 nucleotidesGFF4768 and GFF4769 overlap by 1 nucleotides GFF4767 - putative cytoplasmic protein, at 76,100 to 76,426 GFF4767 GFF4768 - FIG032766: hypothetical protein, at 77,190 to 77,405 GFF4768 GFF4769 - FIG001353: Acetyltransferase, at 77,405 to 77,929 GFF4769 Position (kb) 76 77Strain fitness (log2 ratio) -1 0 1at 75.116 kb on + strandat 75.253 kb on - strandat 75.303 kb on + strandat 75.329 kb on + strandat 75.365 kb on + strandat 75.373 kb on + strandat 75.452 kb on + strandat 75.452 kb on + strandat 75.477 kb on - strandat 76.520 kb on - strandat 76.526 kb on + strandat 76.526 kb on + strandat 76.526 kb on + strandat 76.527 kb on - strandat 76.527 kb on - strandat 76.618 kb on - strandat 76.633 kb on - strandat 76.633 kb on - strandat 76.694 kb on - strandat 76.781 kb on + strandat 76.782 kb on - strandat 76.794 kb on + strandat 76.852 kb on + strandat 76.870 kb on - strandat 76.948 kb on - strandat 76.990 kb on + strandat 76.991 kb on - strandat 76.991 kb on - strandat 77.041 kb on - strandat 77.086 kb on - strandat 77.135 kb on - strandat 77.165 kb on - strandat 77.171 kb on - strandat 77.255 kb on - strand, within GFF4768

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 0.01875 MOI
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75,116 + -0.2
75,253 - -0.5
75,303 + +0.1
75,329 + +0.2
75,365 + +0.8
75,373 + +0.0
75,452 + +0.3
75,452 + +0.4
75,477 - -0.1
76,520 - -0.6
76,526 + +0.2
76,526 + +0.2
76,526 + +0.2
76,527 - -0.4
76,527 - +0.6
76,618 - +0.5
76,633 - -0.2
76,633 - +0.3
76,694 - -1.4
76,781 + -0.2
76,782 - -0.4
76,794 + -0.2
76,852 + +0.0
76,870 - +0.2
76,948 - -0.0
76,990 + +0.3
76,991 - -0.5
76,991 - +0.3
77,041 - +0.2
77,086 - +0.3
77,135 - -0.1
77,165 - -0.7
77,171 - -0.2
77,255 - GFF4768 0.30 -1.4

Or see this region's nucleotide sequence