Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF157

Experiment: LB_plus_SM_buffer with phi19h1_phage 0.01875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF156 and GFF157 are separated by 1 nucleotidesGFF157 and GFF158 are separated by 605 nucleotides GFF156 - rRNA small subunit methyltransferase H, at 147,742 to 148,683 GFF156 GFF157 - Cell division protein MraZ, at 148,685 to 149,143 GFF157 GFF158 - Fructose repressor FruR, LacI family, at 149,749 to 150,753 GFF158 Position (kb) 148 149 150Strain fitness (log2 ratio) -1 0 1 2at 148.195 kb on - strand, within GFF156at 148.917 kb on - strand, within GFF157at 148.926 kb on - strand, within GFF157at 149.036 kb on - strand, within GFF157at 149.040 kb on - strand, within GFF157at 149.163 kb on - strandat 149.326 kb on + strandat 149.326 kb on + strandat 149.426 kb on + strandat 149.434 kb on - strandat 149.434 kb on - strandat 149.461 kb on - strandat 149.479 kb on + strandat 149.593 kb on - strandat 149.698 kb on + strandat 149.986 kb on + strand, within GFF158at 150.043 kb on - strand, within GFF158at 150.108 kb on - strand, within GFF158

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 0.01875 MOI
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148,195 - GFF156 0.48 +0.2
148,917 - GFF157 0.51 +0.5
148,926 - GFF157 0.53 +0.5
149,036 - GFF157 0.76 +0.1
149,040 - GFF157 0.77 +0.9
149,163 - -0.0
149,326 + -0.2
149,326 + +0.0
149,426 + +0.1
149,434 - +0.1
149,434 - -0.0
149,461 - -0.0
149,479 + +1.8
149,593 - -0.0
149,698 + +0.7
149,986 + GFF158 0.24 -0.3
150,043 - GFF158 0.29 -0.8
150,108 - GFF158 0.36 -0.9

Or see this region's nucleotide sequence